Miyakogusa Predicted Gene

Lj4g3v0599890.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0599890.1 tr|C1FI28|C1FI28_MICSR Transcription initiation
factor IIE, alpha subunit OS=Micromonas sp. (strain
,33.5,4e-19,TFIIE_alpha,TFIIEalpha/SarR/Rpc3 HTH domain;
coiled-coil,NULL; Zinc beta-ribbon,NULL; HTH_TFE_IIE,Tr,CUFF.47640.1
         (618 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80033 weakly similar to UniRef100_A9S7R4 Cluster: Pre...   698   0.0  

>gnl|LJGI|TC80033 weakly similar to UniRef100_A9S7R4 Cluster: Predicted protein; n=1;
           Physcomitrella patens subsp. patens|Rep: Predicted
           protein - Physcomitrella patens subsp. patens, partial
           (25%)
          Length = 953

 Score =  698 bits (352), Expect = 0.0
 Identities = 355/356 (99%)
 Strand = Plus / Plus

                                                                       
Query: 263 agacagcaaaaggtgcaaaaatttatagtgctgctgtagctgctacagctgacagtcaac 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agacagcaaaaggtgcaaaaatttatagtgctgctgtagctgctacagctgacagtcaac 328

                                                                       
Query: 323 agacaggaaaagagggagaagaaaaggtcaaactgcacacacactcttactgctgtttag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agacaggaaaagagggagaagaaaaggtcaaactgcacacacactcttactgctgtttag 388

                                                                       
Query: 383 attatgcacagatatatgatgtgactaggtacagactgcatcgcatgaagcataaactga 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 attatgcacagatatatgatgtgactaggtacagactgcatcgcatgaagcataaactga 448

                                                                       
Query: 443 aagatgaattggataacaaaaatacacttcaggagtacatatgtccaaactgtgcaaaaa 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aagatgaattggataacaaaaatacacttcaggagtacatatgtccaaactgtgcaaaaa 508

                                                                       
Query: 503 gatacaatgctttggatgcactgcggttaatatctttcgaagatgaggacttccattgtg 562
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 509 gatacaatgctttggatgcactgcggttaatatctttcgaagatgaggacttccatcgtg 568

                                                                   
Query: 563 aaagttgtaatgggaaactagaggttgaaagtgataaaatagctgctcaagaaggt 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaagttgtaatgggaaactagaggttgaaagtgataaaatagctgctcaagaaggt 624



 Score =  264 bits (133), Expect = 6e-70
 Identities = 142/145 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattgaaccttacaacaagttggttaaactagcagcaagggctttctatgatgatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atgattgaaccttacaacaagttggttaaactagcagcaagggctttctatgatgatctt 187

                                                                       
Query: 61  accagcaaaggagataatcaaccaaaatcaggaggaagtgataacagagggatagctgtt 120
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 188 accagcaaaggagataatcaaccaaaatcaggaagaagtgataacagaggaatagctgtt 247

                                    
Query: 121 gtcgttctttatgcactcacaagac 145
           ||||||||| |||||||||||||||
Sbjct: 248 gtcgttcttgatgcactcacaagac 272