Miyakogusa Predicted Gene
- Lj4g3v0575400.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0575400.2 Non Chatacterized Hit- tr|A9NWA0|A9NWA0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,24.44,0.0000006,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait;
RNA-binding,CUFF.47618.2
(966 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63380 similar to UniRef100_A7P9G1 Cluster: Chromosome... 884 0.0
gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Clust... 676 0.0
gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Clust... 321 5e-87
gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome... 72 7e-12
gnl|LJGI|TC70242 similar to UniRef100_Q93YF1 Cluster: Nucleic ac... 66 4e-10
gnl|LJGI|BW623005 similar to UniRef100_A7R0L9 Cluster: Chromosom... 60 3e-08
gnl|LJGI|TC77675 similar to UniRef100_Q9LEB4 Cluster: RNA Bindin... 60 3e-08
gnl|LJGI|TC71616 similar to UniRef100_A7P0R8 Cluster: Chromosome... 60 3e-08
gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome... 54 2e-06
>gnl|LJGI|TC63380 similar to UniRef100_A7P9G1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 769
Score = 884 bits (446), Expect = 0.0
Identities = 446/446 (100%)
Strand = Plus / Plus
Query: 521 attcttcacaagctgtagtgttagctggtggacatccgtctaatggtgctgtggcccaag 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 attcttcacaagctgtagtgttagctggtggacatccgtctaatggtgctgtggcccaag 61
Query: 581 gttctcagtccgacggggattctaacaacacaacaatatttgttggagggcttgattctg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gttctcagtccgacggggattctaacaacacaacaatatttgttggagggcttgattctg 121
Query: 641 atatcagtgatgaggatctgagacaaccgtttttgcaatttggtgatgttgtctctgtga 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atatcagtgatgaggatctgagacaaccgtttttgcaatttggtgatgttgtctctgtga 181
Query: 701 aaattccagtgggtaaagggtgtggtttcgttcaatttgctgacagaaagaatgcggagg 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aaattccagtgggtaaagggtgtggtttcgttcaatttgctgacagaaagaatgcggagg 241
Query: 761 aagcaattcacgcattgaatggaacagtgattgggaagcagacagtgcgtctttcttggg 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aagcaattcacgcattgaatggaacagtgattgggaagcagacagtgcgtctttcttggg 301
Query: 821 gccgcagtccaggaaataagcattggaggtctgattccaacggcggccattacggtggtc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gccgcagtccaggaaataagcattggaggtctgattccaacggcggccattacggtggtc 361
Query: 881 agggttatggaggccatggatatggagcgagacagaatcaagatatgggtatgcatccta 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agggttatggaggccatggatatggagcgagacagaatcaagatatgggtatgcatccta 421
Query: 941 ctgctgcaattcaaggtgcttcgtaa 966
||||||||||||||||||||||||||
Sbjct: 422 ctgctgcaattcaaggtgcttcgtaa 447
>gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (41%)
Length = 832
Score = 676 bits (341), Expect = 0.0
Identities = 341/341 (100%)
Strand = Plus / Plus
Query: 1 atggatgagaactacgttcataactgcttcgctcacaccggcgaggttgtgtcagcgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atggatgagaactacgttcataactgcttcgctcacaccggcgaggttgtgtcagcgaag 551
Query: 61 gtcattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gtcattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattcg 611
Query: 121 cgagcaacagctgagaaagtcttgcagaattttaacgggacaatgatgccaaatacagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cgagcaacagctgagaaagtcttgcagaattttaacgggacaatgatgccaaatacagat 671
Query: 181 caggcattccgtcttaattgggcttcattcagcgcaggtgaaaggcgttctgaggctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 caggcattccgtcttaattgggcttcattcagcgcaggtgaaaggcgttctgaggctgct 731
Query: 241 acttctgatctctctatatttgtgggggacttggccatagatgttactgatgccatgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 acttctgatctctctatatttgtgggggacttggccatagatgttactgatgccatgctg 791
Query: 301 caagagacttttggtagcagattttcgtctataaagggagc 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 caagagacttttggtagcagattttcgtctataaagggagc 832
>gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (26%)
Length = 783
Score = 321 bits (162), Expect = 5e-87
Identities = 228/238 (95%), Gaps = 9/238 (3%)
Strand = Plus / Plus
Query: 1 atggatgagaactacgttcataactgcttcgctcacaccggcgaggttgtgtcagcgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atggatgagaactacgttcataactgcttcgctcacaccggcgaggttgtgtcagcgaag 605
Query: 61 gtcattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctatt-c 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 606 gtcattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattcc 665
Query: 120 gcgagcaaca-gctgagaaagtcttgcagaat-tttaacgggacaatg-atg-ccaaata 175
|||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct: 666 gcgagcaacacgctgagaaagtcttgcagaatctttaacgggacaatgcatgcccaaata 725
Query: 176 ca-gatcaggcattccgtcttaa-ttgggcttcattca-gcg-caggtgaaaggcgtt 229
|| |||||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct: 726 cacgatcaggcattccgtcttaacatgggcttcattcacgcgccaggtgaaaggcgtt 783
>gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 761
Score = 71.9 bits (36), Expect = 7e-12
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 64 attcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattcgcga 123
||||| |||||||| |||||| || ||||| ||||||||||||||||||||||| |
Sbjct: 455 attcgcaataagcagactggtttatcagagggttatggatttgtggagttctattcacac 514
Query: 124 gcaacagctgagaaagtcttgcagaatt 151
|| |||||||||||||| || |||||||
Sbjct: 515 gccacagctgagaaagttttacagaatt 542
>gnl|LJGI|TC70242 similar to UniRef100_Q93YF1 Cluster: Nucleic acid binding protein;
n=1; Nicotiana tabacum|Rep: Nucleic acid binding protein
- Nicotiana tabacum (Common tobacco), partial (30%)
Length = 688
Score = 65.9 bits (33), Expect = 4e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 790 attgggaagcagacagtgcgtctttcttggggccgcagtccaggaaataagca 842
||||| ||||| ||||| ||||||||||||||||||| ||||| |||||||||
Sbjct: 196 attggaaagcaaacagttcgtctttcttggggccgcaatccagcaaataagca 248
>gnl|LJGI|BW623005 similar to UniRef100_A7R0L9 Cluster: Chromosome chr10 scaffold_312,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_312, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (34%)
Length = 509
Score = 60.0 bits (30), Expect = 3e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 24 ctgcttcgctcacaccggcgaggttgtgtcagcgaaggtcattcggaataagcaaactgg 83
|||||||||||||||||||||||| | | | |||||| ||| |||| |||||||||
Sbjct: 351 ctgcttcgctcacaccggcgaggtgacgactgtgaaggtgattaggaacaagcaaacttc 410
Query: 84 tcagtcggagggatatgg 101
|||||||||||| |||||
Sbjct: 411 tcagtcggagggttatgg 428
>gnl|LJGI|TC77675 similar to UniRef100_Q9LEB4 Cluster: RNA Binding Protein 45; n=1;
Nicotiana plumbaginifolia|Rep: RNA Binding Protein 45 -
Nicotiana plumbaginifolia (Leadwort-leaved tobacco),
partial (75%)
Length = 1536
Score = 60.0 bits (30), Expect = 3e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 24 ctgcttcgctcacaccggcgaggttgtgtcagcgaaggtcattcggaataagcaaactgg 83
|||||||||||||||||||||||| | | | |||||| ||| |||| |||||||||
Sbjct: 340 ctgcttcgctcacaccggcgaggtgacgactgtgaaggtgattaggaacaagcaaacttc 399
Query: 84 tcagtcggagggatatgg 101
|||||||||||| |||||
Sbjct: 400 tcagtcggagggttatgg 417
>gnl|LJGI|TC71616 similar to UniRef100_A7P0R8 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 536
Score = 60.0 bits (30), Expect = 3e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 24 ctgcttcgctcacaccggcgaggttgtgtcagcgaaggtcattcggaataagcaaactgg 83
|||||||||||||||||||||||| | | | |||||| ||| |||| |||||||||
Sbjct: 391 ctgcttcgctcacaccggcgaggtgacgactgtgaaggtgattaggaacaagcaaacttc 450
Query: 84 tcagtcggagggatatgg 101
|||||||||||| |||||
Sbjct: 451 tcagtcggagggttatgg 468
>gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 792
Score = 54.0 bits (27), Expect = 2e-06
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 58 aaggtcattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctat 117
||||| ||||| |||||| ||||||| ||| ||||| |||||||||||||| ||||||
Sbjct: 481 aaggttattcgcaataagtctactggtctgtcagagggttatggatttgtggaattctat 540
Query: 118 tcgc-gagcaacagctgagaaagtctt 143
|| | ||| |||||||||||||||||
Sbjct: 541 tcacatagc-acagctgagaaagtctt 566