Miyakogusa Predicted Gene
- Lj4g3v0575400.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0575400.1 Non Chatacterized Hit- tr|I3S4D1|I3S4D1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,29.17,0.000000000001,RRM,RNA recognition motif domain; RRM_1,RNA
recognition motif domain; RNA-binding domain, RBD,NULL; ,CUFF.47618.1
(1113 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Clust... 791 0.0
gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Clust... 436 e-121
gnl|LJGI|TC63380 similar to UniRef100_A7P9G1 Cluster: Chromosome... 188 5e-47
gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome... 72 8e-12
gnl|LJGI|BW623005 similar to UniRef100_A7R0L9 Cluster: Chromosom... 60 3e-08
gnl|LJGI|TC77675 similar to UniRef100_Q9LEB4 Cluster: RNA Bindin... 60 3e-08
gnl|LJGI|TC71616 similar to UniRef100_A7P0R8 Cluster: Chromosome... 60 3e-08
gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome... 54 2e-06
>gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (41%)
Length = 832
Score = 791 bits (399), Expect = 0.0
Identities = 399/399 (100%)
Strand = Plus / Plus
Query: 315 aggcggtggtggtggtgatgagatcaggacgatctggctcggtgaccttcatcattggat 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aggcggtggtggtggtgatgagatcaggacgatctggctcggtgaccttcatcattggat 493
Query: 375 ggatgagaactacgttcataactgcttcgctcacaccggcgaggttgtgtcagcgaaggt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggatgagaactacgttcataactgcttcgctcacaccggcgaggttgtgtcagcgaaggt 553
Query: 435 cattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattcgcg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattcgcg 613
Query: 495 agcaacagctgagaaagtcttgcagaattttaacgggacaatgatgccaaatacagatca 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agcaacagctgagaaagtcttgcagaattttaacgggacaatgatgccaaatacagatca 673
Query: 555 ggcattccgtcttaattgggcttcattcagcgcaggtgaaaggcgttctgaggctgctac 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggcattccgtcttaattgggcttcattcagcgcaggtgaaaggcgttctgaggctgctac 733
Query: 615 ttctgatctctctatatttgtgggggacttggccatagatgttactgatgccatgctgca 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttctgatctctctatatttgtgggggacttggccatagatgttactgatgccatgctgca 793
Query: 675 agagacttttggtagcagattttcgtctataaagggagc 713
|||||||||||||||||||||||||||||||||||||||
Sbjct: 794 agagacttttggtagcagattttcgtctataaagggagc 832
Score = 295 bits (149), Expect = 3e-79
Identities = 152/153 (99%)
Strand = Plus / Plus
Query: 112 tggatggccatgcagtatcctgcaaccgccatggctatgatgcagcaacagatgatgatg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tggatggccatgcagtatcctgcaaccgccatggctatgatgcagcaacagatgatgatg 290
Query: 172 tacccgcagcattacatgccttatgtacatcatcattaccagcctcaccaccagcagcag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tacccgcagcattacatgccttatgtacatcatcattaccagcctcaccaccagcagcag 350
Query: 232 aaagcagcggcggctgcggcgggggcggtgcct 264
||||||||||||||||||||||||||||||||
Sbjct: 351 caagcagcggcggctgcggcgggggcggtgcct 383
Score = 99.6 bits (50), Expect = 4e-20
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 1 atggctcaacctagcaacggttccgccgatctgaaccaaaacgcgccgcc 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 atggctcaacctagcaacggttccgccgatctgaaccaaaacgcgccgcc 187
>gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (26%)
Length = 783
Score = 436 bits (220), Expect = e-121
Identities = 286/296 (96%), Gaps = 9/296 (3%)
Strand = Plus / Plus
Query: 315 aggcggtggtggtggtgatgagatcaggacgatctggctcggtgaccttcatcattggat 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggcggtggtggtggtgatgagatcaggacgatctggctcggtgaccttcatcattggat 547
Query: 375 ggatgagaactacgttcataactgcttcgctcacaccggcgaggttgtgtcagcgaaggt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggatgagaactacgttcataactgcttcgctcacaccggcgaggttgtgtcagcgaaggt 607
Query: 435 cattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctatt-cgc 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 608 cattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattccgc 667
Query: 494 gagcaaca-gctgagaaagtcttgcagaat-tttaacgggacaatg-atg-ccaaataca 549
|||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct: 668 gagcaacacgctgagaaagtcttgcagaatctttaacgggacaatgcatgcccaaataca 727
Query: 550 -gatcaggcattccgtcttaa-ttgggcttcattca-gcg-caggtgaaaggcgtt 601
|||||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct: 728 cgatcaggcattccgtcttaacatgggcttcattcacgcgccaggtgaaaggcgtt 783
Score = 295 bits (149), Expect = 3e-79
Identities = 152/153 (99%)
Strand = Plus / Plus
Query: 112 tggatggccatgcagtatcctgcaaccgccatggctatgatgcagcaacagatgatgatg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tggatggccatgcagtatcctgcaaccgccatggctatgatgcagcaacagatgatgatg 344
Query: 172 tacccgcagcattacatgccttatgtacatcatcattaccagcctcaccaccagcagcag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tacccgcagcattacatgccttatgtacatcatcattaccagcctcaccaccagcagcag 404
Query: 232 aaagcagcggcggctgcggcgggggcggtgcct 264
||||||||||||||||||||||||||||||||
Sbjct: 405 caagcagcggcggctgcggcgggggcggtgcct 437
Score = 99.6 bits (50), Expect = 4e-20
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 1 atggctcaacctagcaacggttccgccgatctgaaccaaaacgcgccgcc 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atggctcaacctagcaacggttccgccgatctgaaccaaaacgcgccgcc 241
>gnl|LJGI|TC63380 similar to UniRef100_A7P9G1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 769
Score = 188 bits (95), Expect = 5e-47
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 893 attcttcacaagctgtagtgttagctggtggacatccgtctaatggtgctgtggcccaag 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 attcttcacaagctgtagtgttagctggtggacatccgtctaatggtgctgtggcccaag 61
Query: 953 gttctcagtccgacggggattctaacaacacaaca 987
|||||||||||||||||||||||||||||||||||
Sbjct: 62 gttctcagtccgacggggattctaacaacacaaca 96
Score = 91.7 bits (46), Expect = 9e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 1068 atatttgttggagggcttgattctgatatcagtgatgaggatctga 1113
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 atatttgttggagggcttgattctgatatcagtgatgaggatctga 142
>gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 761
Score = 71.9 bits (36), Expect = 8e-12
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 436 attcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattcgcga 495
||||| |||||||| |||||| || ||||| ||||||||||||||||||||||| |
Sbjct: 455 attcgcaataagcagactggtttatcagagggttatggatttgtggagttctattcacac 514
Query: 496 gcaacagctgagaaagtcttgcagaatt 523
|| |||||||||||||| || |||||||
Sbjct: 515 gccacagctgagaaagttttacagaatt 542
>gnl|LJGI|BW623005 similar to UniRef100_A7R0L9 Cluster: Chromosome chr10 scaffold_312,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_312, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (34%)
Length = 509
Score = 60.0 bits (30), Expect = 3e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 396 ctgcttcgctcacaccggcgaggttgtgtcagcgaaggtcattcggaataagcaaactgg 455
|||||||||||||||||||||||| | | | |||||| ||| |||| |||||||||
Sbjct: 351 ctgcttcgctcacaccggcgaggtgacgactgtgaaggtgattaggaacaagcaaacttc 410
Query: 456 tcagtcggagggatatgg 473
|||||||||||| |||||
Sbjct: 411 tcagtcggagggttatgg 428
>gnl|LJGI|TC77675 similar to UniRef100_Q9LEB4 Cluster: RNA Binding Protein 45; n=1;
Nicotiana plumbaginifolia|Rep: RNA Binding Protein 45 -
Nicotiana plumbaginifolia (Leadwort-leaved tobacco),
partial (75%)
Length = 1536
Score = 60.0 bits (30), Expect = 3e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 396 ctgcttcgctcacaccggcgaggttgtgtcagcgaaggtcattcggaataagcaaactgg 455
|||||||||||||||||||||||| | | | |||||| ||| |||| |||||||||
Sbjct: 340 ctgcttcgctcacaccggcgaggtgacgactgtgaaggtgattaggaacaagcaaacttc 399
Query: 456 tcagtcggagggatatgg 473
|||||||||||| |||||
Sbjct: 400 tcagtcggagggttatgg 417
>gnl|LJGI|TC71616 similar to UniRef100_A7P0R8 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 536
Score = 60.0 bits (30), Expect = 3e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 396 ctgcttcgctcacaccggcgaggttgtgtcagcgaaggtcattcggaataagcaaactgg 455
|||||||||||||||||||||||| | | | |||||| ||| |||| |||||||||
Sbjct: 391 ctgcttcgctcacaccggcgaggtgacgactgtgaaggtgattaggaacaagcaaacttc 450
Query: 456 tcagtcggagggatatgg 473
|||||||||||| |||||
Sbjct: 451 tcagtcggagggttatgg 468
>gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 792
Score = 54.0 bits (27), Expect = 2e-06
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 430 aaggtcattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctat 489
||||| ||||| |||||| ||||||| ||| ||||| |||||||||||||| ||||||
Sbjct: 481 aaggttattcgcaataagtctactggtctgtcagagggttatggatttgtggaattctat 540
Query: 490 tcgc-gagcaacagctgagaaagtctt 515
|| | ||| |||||||||||||||||
Sbjct: 541 tcacatagc-acagctgagaaagtctt 566