Miyakogusa Predicted Gene
- Lj4g3v0510210.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0510210.1 Non Chatacterized Hit- tr|B9RV94|B9RV94_RICCO
Signal recognition particle 54 kD protein, putative
OS,78.7,0,SRP54,Signal recognition particle, SRP54 subunit, GTPase
domain; SRP54,Signal recognition particle, ,CUFF.47541.1
(1449 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80914 similar to UniRef100_A8MSA9 Cluster: Uncharacte... 583 e-165
gnl|LJGI|TC72150 homologue to UniRef100_A7QIK3 Cluster: Chromoso... 434 e-121
gnl|LJGI|GO007107 homologue to UniRef100_P49971 Cluster: Signal ... 301 6e-81
gnl|LJGI|TC71661 homologue to UniRef100_P49972 Cluster: Signal r... 297 1e-79
>gnl|LJGI|TC80914 similar to UniRef100_A8MSA9 Cluster: Uncharacterized protein
At1g48900.2; n=1; Arabidopsis thaliana|Rep:
Uncharacterized protein At1g48900.2 - Arabidopsis
thaliana (Mouse-ear cress), partial (37%)
Length = 474
Score = 583 bits (294), Expect = e-165
Identities = 431/474 (90%), Gaps = 2/474 (0%)
Strand = Plus / Plus
Query: 746 ctaaaatggatggccatgcaaagggtggtggtgctcttagtgctgttgcggcaactaaga 805
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 1 ctaaaatggatggccatgcaaagggtggtggtgctcttagcgctgttgcagcaactaaga 60
Query: 806 gtcctgtcatattcattggaactggagaacacatggatgaatttgaagtttttgatgttg 865
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 gtcctgtcatattcattggaactggagaacatatggatgaatttgaagtttttgatgtta 120
Query: 866 aaccatttgttagtcgtctattaggcatggaagacttgtctggtttcatggacaaaattc 925
|||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 121 aaccgtttgttagtcgtctattaggcatgggagatttgtctgggttcatggacaaaattc 180
Query: 926 aggaagttgttcctatggatcaacggcatgaactgcttcaaaagctgtcaaaaggaatct 985
|||||||||||||||||||||||| || |||||||||||||||||||||| |||||| ||
Sbjct: 181 aggaagttgttcctatggatcaacagcctgaactgcttcaaaagctgtcagaaggaaact 240
Query: 986 acacattaaggattatgtacaagcagtttcaaaacttccttgaaatcggtcctattgacc 1045
|| |||||||||||||| |||||||||||||| | ||| |||| |||||||| | |
Sbjct: 241 ttaccttaaggattatgtatgagcagtttcaaaacatacttaaaatgggtcctatcggtc 300
Query: 1046 aggtattttctgccctgccatgttttggttctgaattaatggaaaaaggccgtgagaagg 1105
||||||||||| || ||| | ||| |||||||||||||| |||||||||||||||||
Sbjct: 301 aggtattttctatgctaccaggatttagttctgaattaatgccaaaaggccgtgagaagg 360
Query: 1106 aaaaccaggctaaaattaagcgttacatgagaatgatggactcaatgacaaacgaagagt 1165
||| || || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 361 aaagtcaagc-caaattaagcgttacatgacaatgatggactcaatgacaaacgaagagt 419
Query: 1166 tggatacatcaaacccaaaactcatgaatgagtcaagaatgatgcgagtagctc 1219
|||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 420 tggatagctcaaacccaaaa-tgatgaatgagtcaagaatgatgcgagtagctc 472
>gnl|LJGI|TC72150 homologue to UniRef100_A7QIK3 Cluster: Chromosome chr9
scaffold_104, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr9 scaffold_104, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (35%)
Length = 667
Score = 434 bits (219), Expect = e-121
Identities = 423/491 (86%)
Strand = Plus / Plus
Query: 28 agcatttctcgtgctcttcagcagatgagcaatgccaccatgatcaatgagaaggtcctc 87
|||||||| |||||||| |||||||||||||||||||| ||||| | ||||||||||||
Sbjct: 174 agcatttcgcgtgctctccagcagatgagcaatgccacggtgatcgacgagaaggtcctc 233
Query: 88 aacgaatgcctcaacgagatcactcgcgcccttcttcaatccggtgtcgaattcgagctc 147
|||||||||||||| ||||||||||| || ||||||||||||| ||| ||||| |||||
Sbjct: 234 aacgaatgcctcaaggagatcactcgagctcttcttcaatccgatgttcaattcaagctc 293
Query: 148 gtccgcgacatgcagaccaacatcaagaagattgtcaacctcgacgatctcactgcaggc 207
||| |||||||||||||||||||||||||||||||||||| ||| ||||| | || ||
Sbjct: 294 gtcgccgacatgcagaccaacatcaagaagattgtcaaccttgaccatctcgccgccggt 353
Query: 208 cacaacaagcgcaagatattctgccaagctgtgatcgatgaactctgtaagcttctggat 267
||| |||| |||||||| || ||||||||| | |||| ||||| || | ||||||
Sbjct: 354 cacgacaaacgcaagatcatccaacaagctgtgtttaatgagctctgcaaaatgctggat 413
Query: 268 tctggaaagccttctcatactcccaaaagacgaaaagcaagtgttgtcatgattgttggt 327
|||| ||||| ||| ||||||| | | |||| ||||||| |||||| | ||||||
Sbjct: 414 cctgggaagccctctttcgctcccaagaaaggaaatacaagtgtggtcatgttcgttggt 473
Query: 328 ttacaaggatctggaaaaaccacaacttgtacaaaatatggacattatcatcaaaagaaa 387
|||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| ||||||
Sbjct: 474 ttacaaggttctggaaaaactacaacctgtacaaaatatgcacattatcatcagaagaaa 533
Query: 388 ggctggaagccagctctagtatgtgctgatacattcagagctgatgcatttgatcagttg 447
|| ||||||||||||||||| ||||| |||||||||||||||| |||||||||||| |||
Sbjct: 534 ggatggaagccagctctagtttgtgcagatacattcagagctggtgcatttgatcaattg 593
Query: 448 aagcaaaatgcaactaaagctaagatcccttattatggaagctatatagaatcagatcct 507
||||||||||| |||||||||||||||||| || ||||||||||| || |||||||||
Sbjct: 594 aagcaaaatgccgctaaagctaagatccctttctacggaagctatatggagtcagatcct 653
Query: 508 gtgaaaattgc 518
|||||||||||
Sbjct: 654 gtgaaaattgc 664
>gnl|LJGI|GO007107 homologue to UniRef100_P49971 Cluster: Signal recognition particle
54 kDa protein 1; n=1; Solanum lycopersicum|Rep: Signal
recognition particle 54 kDa protein 1 - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum), partial
(20%)
Length = 301
Score = 301 bits (152), Expect = 6e-81
Identities = 263/300 (87%)
Strand = Plus / Plus
Query: 137 aattcgagctcgtccgcgacatgcagaccaacatcaagaagattgtcaacctcgacgatc 196
||||| ||||||||||||| ||||||||||| ||||||||||||||||| || || ||||
Sbjct: 2 aattcaagctcgtccgcgatatgcagaccaatatcaagaagattgtcaatctggaggatc 61
Query: 197 tcactgcaggccacaacaagcgcaagatattctgccaagctgtgatcgatgaactctgta 256
|| |||| || ||||||||||||| ||| || ||||||||| || |||||||||| |
Sbjct: 62 tcgctgcgggacacaacaagcgcaggatcatccagcaagctgtgttcaatgaactctgca 121
Query: 257 agcttctggattctggaaagccttctcatactcccaaaagacgaaaagcaagtgttgtca 316
| | |||||| |||||||||| || ||||| ||||| | ||||| ||||||||||||
Sbjct: 122 aaatcctggatcctggaaagccggcttttactctcaaaaaaggaaaaccaagtgttgtca 181
Query: 317 tgattgttggtttacaaggatctggaaaaaccacaacttgtacaaaatatggacattatc 376
|| |||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct: 182 tgtttgttggtttacaaggatctggaaaaaccacaacttgtacgaaatatgcatattatc 241
Query: 377 atcaaaagaaaggctggaagccagctctagtatgtgctgatacattcagagctgatgcat 436
||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct: 242 atcaaaagaaaggctggaagccagctctagtatgtgcagatacatttagagctggtgcat 301
>gnl|LJGI|TC71661 homologue to UniRef100_P49972 Cluster: Signal recognition particle 54
kDa protein 2; n=1; Solanum lycopersicum|Rep: Signal
recognition particle 54 kDa protein 2 - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum), partial
(35%)
Length = 911
Score = 297 bits (150), Expect = 1e-79
Identities = 279/322 (86%)
Strand = Plus / Plus
Query: 991 ttaaggattatgtacaagcagtttcaaaacttccttgaaatcggtcctattgaccaggta 1050
|||||||||||||| |||||||||||||| | ||| |||| |||||||| | ||||||
Sbjct: 14 ttaaggattatgtatgagcagtttcaaaacatacttaaaatgggtcctatcggtcaggta 73
Query: 1051 ttttctgccctgccatgttttggttctgaattaatggaaaaaggccgtgagaaggaaaac 1110
|||||| || ||| | ||| |||||||||||||| ||||||||||||||||||||
Sbjct: 74 ttttctatgctaccaggatttagttctgaattaatgccaaaaggccgtgagaaggaaagt 133
Query: 1111 caggctaaaattaagcgttacatgagaatgatggactcaatgacaaacgaagagttggat 1170
|| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 134 caagccaaaattaagcgttacatgacaatgatggactcaatgacaaacgaagagttggat 193
Query: 1171 acatcaaacccaaaactcatgaatgagtcaagaatgatgcgagtagctcaaggttctggt 1230
| |||||||| ||| | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 194 agctcaaaccccaaaatgatgaatgagtcaagaatgatgcgagtagctcgaggttctggt 253
Query: 1231 tgtcatgttagggaagtagtggaaatgttggcagagtacaagtatcttgcaaggatgtgg 1290
|||| |||||||||||| |||||||| ||| ||||||||| |||||||| ||| |||
Sbjct: 254 cgtcaggttagggaagtaatggaaatgatggaagagtacaaacgtcttgcaaagatatgg 313
Query: 1291 agaaaacagaaagggcttaaaa 1312
|| ||| |||||| |||||||
Sbjct: 314 agcaaaatgaaaggacttaaaa 335
Score = 69.9 bits (35), Expect = 4e-11
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1340 tgctaaatcaattaggaggcatgcgtggattgcgaagattgatgacaccgatgggaacag 1399
||||||| ||| ||||||||||| ||||||||| ||| ||||||| || ||||||| | |
Sbjct: 414 tgctaaagcaaataggaggcatgggtggattgcaaagcttgatgaaacagatgggatctg 473
Query: 1400 gtaagaacatgatgg 1414
||||| |||||||||
Sbjct: 474 gtaaggacatgatgg 488