Miyakogusa Predicted Gene

Lj4g3v0462580.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0462580.1 Non Chatacterized Hit- tr|I1IGN1|I1IGN1_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,51.49,2e-19,seg,NULL,CUFF.47297.1
         (357 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV412280 weakly similar to UniRef100_Q03500 Cluster: St...   517   e-146
gnl|LJGI|TC70418 similar to UniRef100_Q0D739 Cluster: Os07g02996...   206   7e-53

>gnl|LJGI|AV412280 weakly similar to UniRef100_Q03500 Cluster: Structural protein 2
           precursor; n=1; Hepatitis E virus (strain Mexico)|Rep:
           Structural protein 2 precursor - Hepatitis E virus
           (strain Mexico) (HEV), partial (4%)
          Length = 414

 Score =  517 bits (261), Expect = e-146
 Identities = 261/261 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaacaatcatgaccctgctgaatcagaatcaaatactggagatgtatcttcagctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atgaacaatcatgaccctgctgaatcagaatcaaatactggagatgtatcttcagctcaa 213

                                                                       
Query: 61  gcagttctcctgggagctctagctcccggtgtcaacggtcctacttggattactttaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gcagttctcctgggagctctagctcccggtgtcaacggtcctacttggattactttaaag 273

                                                                       
Query: 121 tcgacttttttgttgctgggtctctctcttgctttcatgctgggtttagcattctcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tcgacttttttgttgctgggtctctctcttgctttcatgctgggtttagcattctcttcc 333

                                                                       
Query: 181 agtgattcatggttggtgcttcatgttgggtttcttgttctaatctgtgttaccctcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agtgattcatggttggtgcttcatgttgggtttcttgttctaatctgtgttaccctcttc 393

                                
Query: 241 ttgcttctcagctggtttctt 261
           |||||||||||||||||||||
Sbjct: 394 ttgcttctcagctggtttctt 414


>gnl|LJGI|TC70418 similar to UniRef100_Q0D739 Cluster: Os07g0299600 protein; n=1;
           Oryza sativa Japonica Group|Rep: Os07g0299600 protein -
           Oryza sativa subsp. japonica (Rice), partial (27%)
          Length = 750

 Score =  206 bits (104), Expect = 7e-53
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                       
Query: 254 ggtttcttgcagaaactggtttagtctctatcgaacatcaaatgtgtgagatgggcttac 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ggtttcttgcagaaactggtttagtctctatcgaacatcaaatgtgtgagatgggcttac 228

                                                       
Query: 314 agcagaaagataatccagagacaaacagaaagaccaaataactg 357
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 agcagaaagataatccagagacaaacagaaagaccaaataactg 272