Miyakogusa Predicted Gene
- Lj4g3v0451230.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0451230.1 tr|D3NX35|D3NX35_AZOS1 50S ribosomal protein L21
OS=Azospirillum sp. (strain B510) GN=rplU PE=3 SV=1,49.04,7e-19,L21:
ribosomal protein L21,Ribosomal protein L21; Ribosomal_L21p,Ribosomal
protein L21; L21p-like,NU,CUFF.47313.1
(834 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61628 similar to UniRef100_A7R4U1 Cluster: 50S riboso... 1039 0.0
gnl|LJGI|GO024570 similar to UniRef100_A7R4U1 Cluster: 50S ribos... 755 0.0
>gnl|LJGI|TC61628 similar to UniRef100_A7R4U1 Cluster: 50S ribosomal protein L21;
n=1; Vitis vinifera|Rep: 50S ribosomal protein L21 -
Vitis vinifera (Grape), partial (52%)
Length = 1261
Score = 1039 bits (524), Expect = 0.0
Identities = 527/528 (99%)
Strand = Plus / Plus
Query: 307 tatgttgctggtgggtcaaaggggaagaaggtgttgacggcggaggagaaggaagcagaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tatgttgctggtgggtcaaaggggaagaaggtgttgacggcggaggagaaggaagcagaa 409
Query: 367 gcggcggctattgggtacaaagtggagggtcctcttctcgagaaggatggggtgtttaaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gcggcggctattgggtacaaagtggagggtcctcttctcgagaaggatggggtgtttaaa 469
Query: 427 ccctatgagcctgtttttgctgttgttcagattggttcgcaccagtttaaagtgagcaat 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccctatgagcctgtttttgctgttgttcagattggttcgcaccagtttaaagtgagcaat 529
Query: 487 ggggacagcattttcactgagaggttgaaattttgtgaagtgaatgataagttgattctg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggggacagcattttcactgagaggttgaaattttgtgaagtgaatgataagttgattctg 589
Query: 547 aacaaagttatgctacttggatctgctactcagacaattatcggcagacccacagtgcca 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aacaaagttatgctacttggatctgctactcagacaattatcggcagacccacagtgcca 649
Query: 607 gatgcagctgttcatgctgttgtcgaagagcatgcactagatgcaaaggtaatcattttt 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gatgcagctgttcatgctgttgtcgaagagcatgcactagatgcaaaggtaatcattttt 709
Query: 667 aagaaaaagagaaggaagaattaccgaagaaccagagggcatcgccaggagttgacaaag 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aagaaaaagagaaggaagaattaccgaagaaccagagggcatcgccaggagttgacaaag 769
Query: 727 ctaaggataactgatattcaaggaattgagaaacctccaatcgtattggacgaaaagccc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctaaggataactgatattcaaggaattgagaaacctccaatcgtattggacgaaaagccc 829
Query: 787 ttgaaagctgctaagaaggaacaggaaaaggttgcagctcctgcttaa 834
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ttgaaaactgctaagaaggaacaggaaaaggttgcagctcctgcttaa 877
Score = 450 bits (227), Expect = e-126
Identities = 227/227 (100%)
Strand = Plus / Plus
Query: 1 atggcgtatagacggtgcctgcaagcgttaacgcgccaagcacacgacgcaaccaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 atggcgtatagacggtgcctgcaagcgttaacgcgccaagcacacgacgcaaccaccttc 103
Query: 61 ctcttcacccacccttcttcaccttctctccgcccttttcccaccgccgccatttcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctcttcacccacccttcttcaccttctctccgcccttttcccaccgccgccatttcctca 163
Query: 121 cccatttccaccaatcccagacccatctctgcttttgcacaatggtgccacctacgctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cccatttccaccaatcccagacccatctctgcttttgcacaatggtgccacctacgctat 223
Query: 181 ttctccacctccaaacaagacgatcacgtcaaaaatggtgcaaacag 227
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ttctccacctccaaacaagacgatcacgtcaaaaatggtgcaaacag 270
>gnl|LJGI|GO024570 similar to UniRef100_A7R4U1 Cluster: 50S ribosomal protein L21;
n=1; Vitis vinifera|Rep: 50S ribosomal protein L21 -
Vitis vinifera (Grape), partial (43%)
Length = 710
Score = 755 bits (381), Expect = 0.0
Identities = 420/429 (97%), Gaps = 8/429 (1%)
Strand = Plus / Plus
Query: 307 tatgttgctggtgggtcaaaggggaagaaggtgttgacggcggaggagaaggaagcagaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tatgttgctggtgggtcaaaggggaagaaggtgttgacggcggaggagaaggaagcagaa 344
Query: 367 gcggcggctattgggtacaaagtggagggtcctcttctcgagaaggatggggtgtttaaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gcggcggctattgggtacaaagtggagggtcctcttctcgagaaggatggggtgtttaaa 404
Query: 427 ccctatgagcctgtttttgctgttgttcag-----attggttcgcaccagtttaaagtga 481
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 405 ccctatgagcctttttttgctgttgttcagtttagattggttcgcaccagtttaaagtga 464
Query: 482 gcaatggggacagcattttcactgagaggttgaaattttgtgaagtgaatgataagttga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gcaatggggacagcattttcactgagaggttgaaattttgtgaagtgaatgataagttga 524
Query: 542 ttctgaacaaagttatgctacttggatctgctactcagacaattatcggcagacccacag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttctgaacaaagttatgctacttggatctgctactcagacaattatcggcagacccacag 584
Query: 602 tgccagatgcagctgttcatgctgttgtcgaagagcatgcactagatgcaaaggtaatca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgccagatgcagctgttcatgctgttgtcgaagagcatgcactagatgcaaaggtaatca 644
Query: 662 tttttaagaaaaagagaaggaagaattaccgaagaaccagagggcatcgccaggagttga 721
|||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 645 tttttaag-aaaagagaa-gaagaattaccgaagaaccaga-ggcatcgccaggagttga 701
Query: 722 caaagctaa 730
|||||||||
Sbjct: 702 caaagctaa 710
Score = 404 bits (204), Expect = e-112
Identities = 204/204 (100%)
Strand = Plus / Plus
Query: 24 agcgttaacgcgccaagcacacgacgcaaccaccttcctcttcacccacccttcttcacc 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agcgttaacgcgccaagcacacgacgcaaccaccttcctcttcacccacccttcttcacc 61
Query: 84 ttctctccgcccttttcccaccgccgccatttcctcacccatttccaccaatcccagacc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttctctccgcccttttcccaccgccgccatttcctcacccatttccaccaatcccagacc 121
Query: 144 catctctgcttttgcacaatggtgccacctacgctatttctccacctccaaacaagacga 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 catctctgcttttgcacaatggtgccacctacgctatttctccacctccaaacaagacga 181
Query: 204 tcacgtcaaaaatggtgcaaacag 227
||||||||||||||||||||||||
Sbjct: 182 tcacgtcaaaaatggtgcaaacag 205