Miyakogusa Predicted Gene
- Lj4g3v0451060.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0451060.1 Non Chatacterized Hit- tr|B8A6M6|B8A6M6_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,47.25,3e-18,HLH, helix-loop-helix DNA-binding
domain,Helix-loop-helix domain; HLH,Helix-loop-helix domain; no
de,CUFF.47251.1
(1179 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP036451 similar to UniRef100_A7QN80 Cluster: Chromosom... 977 0.0
gnl|LJGI|TC79271 similar to UniRef100_A7QN80 Cluster: Chromosome... 708 0.0
gnl|LJGI|GO011534 similar to UniRef100_A7QN80 Cluster: Chromosom... 347 1e-94
gnl|LJGI|BP038089 similar to UniRef100_A7QN80 Cluster: Chromosom... 319 2e-86
gnl|LJGI|GO038216 similar to UniRef100_A7QN80 Cluster: Chromosom... 188 5e-47
>gnl|LJGI|BP036451 similar to UniRef100_A7QN80 Cluster: Chromosome undetermined
scaffold_131, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_131,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (15%)
Length = 496
Score = 977 bits (493), Expect = 0.0
Identities = 495/496 (99%)
Strand = Plus / Plus
Query: 285 ttttcacaattcaatgggatttctaggagaccttccaataggatcagacaacacaagtgc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttcacaattcaatgggatttctaggagaccttccaataggatcagacaacacaagtgc 60
Query: 345 tgcatcctcagttttgtgtgatcctttgtttcatttgaaccaagttcctccaccacctac 404
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcatcctcagtttngtgtgatcctttgtttcatttgaaccaagttcctccaccacctac 120
Query: 405 tgcctttagagagctgttccagtctctcccccgcggctacagctttccgatgagctccca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcctttagagagctgttccagtctctcccccgcggctacagctttccgatgagctccca 180
Query: 465 gaacggctctattttcggcggagaaggcgatgagatagatggagatggtggtagccagct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaacggctctattttcggcggagaaggcgatgagatagatggagatggtggtagccagct 240
Query: 525 tgacatgggggtgctggaattcaatactatcaatagggtcacagcttctgttggcaaagg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgacatgggggtgctggaattcaatactatcaatagggtcacagcttctgttggcaaagg 300
Query: 585 aagggaaggaaaaggtactgagaaagaaagaagagagcaattgaatggaaaatacaagat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagggaaggaaaaggtactgagaaagaaagaagagagcaattgaatggaaaatacaagat 360
Query: 645 cttgaggagtcttatcccaagccccaccaagattgatagagcatctgtggtgggagatgc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttgaggagtcttatcccaagccccaccaagattgatagagcatctgtggtgggagatgc 420
Query: 705 tattgactacataagggaactgattagaacactgaatgagctcaagatattggtggagaa 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tattgactacataagggaactgattagaacactgaatgagctcaagatattggtggagaa 480
Query: 765 gaaaaggtgtgggagg 780
||||||||||||||||
Sbjct: 481 gaaaaggtgtgggagg 496
>gnl|LJGI|TC79271 similar to UniRef100_A7QN80 Cluster: Chromosome undetermined
scaffold_131, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_131, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(21%)
Length = 544
Score = 708 bits (357), Expect = 0.0
Identities = 360/361 (99%)
Strand = Plus / Plus
Query: 819 agagagctgtaacataaagccttttggtgatccagatgggcatattaggacctcatggct 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagctgtaacataaagccttttggtgatccagatgggcatattaggacctcatggct 60
Query: 879 ccagaggaaatcgaaagatagcgaggttgatgtccggattatcgatgacgatgttacaat 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccagaggaaatcgaaagatagcgaggttgatgtccggattatcgatgacgatgttacaat 120
Query: 939 caaactctctcagaggaagaagattaactgccttctgtttgcctccaaggttctggatga 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaactctctcagaggaagaagattaactgccttctgtttgcctccaaggttctggatga 180
Query: 999 gcttcagttggaaattcatcatgttgcaggtggacatgttggtgaatattgcagtttctt 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcttcagttggaaattcatcatgttgcaggtggacatgttggtgaatattgcagtttctt 240
Query: 1059 gctcaatagcaagacaattgaaggttcatcagtctatgcaagtgccatagccaacagaat 1118
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gctcaatagccagacaattgaaggttcatcagtctatgcaagtgccatagccaacagaat 300
Query: 1119 gattgatgttctggacactcagtactacgcagcagcagttccacactcaagtagctatta 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gattgatgttctggacactcagtactacgcagcagcagttccacactcaagtagctatta 360
Query: 1179 g 1179
|
Sbjct: 361 g 361
>gnl|LJGI|GO011534 similar to UniRef100_A7QN80 Cluster: Chromosome undetermined
scaffold_131, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_131,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (38%)
Length = 763
Score = 347 bits (175), Expect = 1e-94
Identities = 564/693 (81%), Gaps = 38/693 (5%)
Strand = Plus / Plus
Query: 278 cacccaattttcacaattcaatgggatttctaggagaccttccaataggatcagacaaca 337
|||||||||| || || |||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 55 cacccaatttccagaactcaatgacctttctaggagaccttccaatgggaccagacaaca 114
Query: 338 caagtgctgcatcctcagttttgtgtgatcctttgtttcatttgaaccaagttcctccac 397
||||||| |||||||||| ||| ||||||| | ||||||||||||| | |||||||
Sbjct: 115 caagtgc---atcctcagttctgtatgatcctctatttcatttgaacc---tgcctccac 168
Query: 398 cacctactgcctttagagagctgttccagtctctcccccgcggctacagctttccgatga 457
||| | ||| | |||||||||||||| ||||||||||| |||||||| || || | |
Sbjct: 169 agcctccagccctcagagagctgttccaatctctcccccgtggctacaggttgccaacca 228
Query: 458 gctcccagaacggctctattttcggcggagaaggcgatgagatagatggagatggtggta 517
|||| | ||| || ||||||| |||| | |||||||| || |||||||| |
Sbjct: 229 gctctagggacgattcgcttttcggtggag---gggatgagatggagggagatggg---a 282
Query: 518 gccagcttgacatgggggtgctggaattcaatactatcaatagggtcacagcttctgttg 577
|||||||||||||||| |||||||| ||||||| ||| ||||||||||||||
Sbjct: 283 gccagcttgacatgggagtgctggatttcaata---------ggggcacagcttctgttg 333
Query: 578 gcaaaggaagggaaggaaaaggt---------------actgagaaagaaagaagagagc 622
||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 334 gcaaaggaagggaaggaaaaggtgccaaaccttttgcaactgagaaagacagaagagagc 393
Query: 623 aattgaatggaaaatacaagatcttgaggagtcttatcccaagccccaccaagattgata 682
||||||||||||||||||| ||||| |||||||||||||| | |||||||||| |||||
Sbjct: 394 aattgaatggaaaatacaaaatctttaggagtcttatccctaaccccaccaagcctgata 453
Query: 683 gagcatctgtggtgggagatgctattgactacataagggaactgattagaacactgaatg 742
|||| ||||| || || ||||| ||||| || ||||| || |||||||||||| | ||||
Sbjct: 454 gagcctctgttgttggtgatgccattgagtatataagagagctgattagaacagtcaatg 513
Query: 743 agctcaagatattggtggagaagaaaaggtgtgggagggagaggtgcaagagggccagaa 802
||||||| ||||||||||||||||||| || ||||||||||||||||||| | | ||
Sbjct: 514 agctcaaactattggtggagaagaaaagacatgagagggagaggtgcaagaggccaaaaa 573
Query: 803 ctgaagatgatggtgcagagagctgtaacataaagccttttggtgatccagatgggcata 862
||||| |||| || || ||||||||||| ||||||||||| ||||||||||| | |
Sbjct: 574 acgaagaggatgctgaggaaagctgtaacattaagccttttggggatccagatggataca 633
Query: 863 ttaggacctcatggctccagaggaaatcgaaagatagcgaggttgatgtccggattatcg 922
| | |||||||||||||||||||||||| ||||| || |||| ||||||||| || ||||
Sbjct: 634 taaagacctcatggctccagaggaaatccaaagacagtgagg-tgatgtccgaatcatcg 692
Query: 923 atgacgatgttacaatcaaactctctcagagga 955
|||| ||||| ||||||||| ||| ||||||||
Sbjct: 693 atgatgatgtcacaatcaaattct-tcagagga 724
>gnl|LJGI|BP038089 similar to UniRef100_A7QN80 Cluster: Chromosome undetermined
scaffold_131, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_131, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(21%)
Length = 526
Score = 319 bits (161), Expect = 2e-86
Identities = 277/315 (87%), Gaps = 3/315 (0%)
Strand = Plus / Minus
Query: 865 aggacctcatggctccagaggaaatcgaaagatagcgaggttgatgtccggattatcgat 924
|||||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||
Sbjct: 522 aggacctcatggctacagaggaaatccaaagagagtgaggtcgatgtccggatcatcgac 463
Query: 925 gacgatgttacaatcaaactctctcagaggaagaagattaactgccttctgtttgcctcc 984
|| ||||| ||||| ||| ||| |||||||||||||||||||||||| ||||||| ||
Sbjct: 462 gatgatgtcacaattaaattctttcagaggaagaagattaactgcctgctgtttgtgtca 403
Query: 985 aaggttctggatgagcttcagttggaaattcatcatgttgcaggtggacatgttggtgaa 1044
|||||||||||||| ||||| |||||| |||| ||| |||||||||||||||||||||||
Sbjct: 402 aaggttctggatgaacttcaattggaacttcaccatcttgcaggtggacatgttggtgaa 343
Query: 1045 tattgcagtttcttgctcaatagcaagacaattgaaggttcatcagtctatgcaagtgcc 1104
||||| ||||||||| |||||||||||| || |||||| |||||||| ||||||||||||
Sbjct: 342 tattggagtttcttgttcaatagcaagataactgaaggctcatcagtttatgcaagtgcc 283
Query: 1105 atagccaacagaatgattgatgttctggacactcagtactacgcagcagcagttccacac 1164
||||||||||| ||||||||||| |||||||||| || || ||||||||||||||
Sbjct: 282 atagccaacagggtgattgatgttttggacactcaatat---gctgcagcagttccacag 226
Query: 1165 tcaagtagctattag 1179
||||||||||||||
Sbjct: 225 acaagtagctattag 211
>gnl|LJGI|GO038216 similar to UniRef100_A7QN80 Cluster: Chromosome undetermined
scaffold_131, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_131,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (26%)
Length = 806
Score = 188 bits (95), Expect = 5e-47
Identities = 332/413 (80%), Gaps = 36/413 (8%)
Strand = Plus / Plus
Query: 278 cacccaattttcacaattcaatgggatttctaggagaccttccaataggatcagacaaca 337
|||||||||| || || |||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 353 cacccaatttccagaactcaatgacctttctaggagaccttccaatgggaccagacaaca 412
Query: 338 caagtgctgcatcctcagttttgtgtgatcctttgtttcatttgaaccaagttcctccac 397
||||||| |||||||||| ||| ||||||| | ||||||||||||| | |||||||
Sbjct: 413 caagtgc---atcctcagttctgtatgatcctctatttcatttgaacc---tgcctccac 466
Query: 398 cacctactgcctttagagagctgttccagtctctcccccgcggctacagctttccgatga 457
||| | ||| | |||||||||||||| ||||||||||| |||||||| || || | |
Sbjct: 467 agcctccagccctcagagagctgttccaatctctcccccgtggctacaggttgccaacca 526
Query: 458 gctcccagaacggctctattttcggcggagaaggcgatgagatagatggagatggtggta 517
||||| | ||| || ||||||| |||| | |||||||| || |||||||| |
Sbjct: 527 gctccagggacgattcgcttttcggtggag---gggatgagatggagggagatggg---a 580
Query: 518 gccagcttgacatgggggtgctggaattcaatactatcaatagggtcacagcttctgttg 577
|||||||||||||||| |||||||| ||||||| ||| ||||||||||||||
Sbjct: 581 gccagcttgacatgggagtgctggatttcaata---------gggacacagcttctgttg 631
Query: 578 gcaaaggaagggaaggaaaaggt---------------actgagaaagaaagaagagagc 622
||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 632 gcaaaggaagggaaggaaaaggtgccaaaccttttgcaactgagaaagacagaagagagc 691
Query: 623 aattgaatggaaaatacaagatcttgaggagtcttatcccaagccccaccaag 675
||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct: 692 aattgaatggaaaatacaaaatcttgaggagtcttatccctaaccccaccaag 744
Score = 97.6 bits (49), Expect = 2e-19
Identities = 88/101 (87%)
Strand = Plus / Plus
Query: 34 atggataccaatttggtgcaagatgtgattgatgaccttccctatcagcaatccatgtgg 93
||||||| | ||||||||||||| || ||||||| || || |||||||||||||| |||
Sbjct: 67 atggataaccatttggtgcaagaggtcattgatgcccctctctatcagcaatccacttgg 126
Query: 94 gaccctaatgttcaagaattccaaaatatgaactatgctaa 134
|||||||||||||||||| | ||| |||||| |||||||||
Sbjct: 127 gaccctaatgttcaagaagtacaagatatgagctatgctaa 167
Score = 77.8 bits (39), Expect = 1e-13
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 234 tctccacttacccacatgctcagcttcatctttgctcaccactccacccaa 284
||||||||| ||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 273 tctccacttgcccacatgctcagcttcatctttactcaccaatccacccaa 323