Miyakogusa Predicted Gene
- Lj4g3v0423210.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0423210.1 tr|D7KJV7|D7KJV7_ARALL Pentatricopeptide
repeat-containing protein OS=Arabidopsis lyrata subsp.
lyra,26.27,4e-18,seg,NULL; PPR_2,Pentatricopeptide repeat;
PPR,Pentatricopeptide repeat; PPR_3,Pentatricopeptide
repe,CUFF.47123.1
(1125 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58584 weakly similar to UniRef100_A7R6L1 Cluster: Chr... 2062 0.0
gnl|LJGI|BW632921 weakly similar to UniRef100_A7R6L1 Cluster: Ch... 674 0.0
gnl|LJGI|AV765255 168 5e-41
>gnl|LJGI|TC58584 weakly similar to UniRef100_A7R6L1 Cluster: Chromosome undetermined
scaffold_1327, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1327,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (65%)
Length = 1378
Score = 2062 bits (1040), Expect = 0.0
Identities = 1040/1040 (100%)
Strand = Plus / Plus
Query: 80 gcatcaagtcactctcgcaggacctgtacaaggaagtgaacttgaggaaactggtggaca 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gcatcaagtcactctcgcaggacctgtacaaggaagtgaacttgaggaaactggtggaca 185
Query: 140 agttcaagaaagcttgcgatgttgaccgtttccgaaccaaaaccggcatctacgaggaca 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 agttcaagaaagcttgcgatgttgaccgtttccgaaccaaaaccggcatctacgaggaca 245
Query: 200 cggttcgccgcctcgccggcgccaaacagttccggggagtaatcgacatcctcgagcatc 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cggttcgccgcctcgccggcgccaaacagttccggggagtaatcgacatcctcgagcatc 305
Query: 260 agaagcagtattccgacttctccaaagaagggttctctgcgcgcctcatcactctctacg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agaagcagtattccgacttctccaaagaagggttctctgcgcgcctcatcactctctacg 365
Query: 320 gcaaatccggcatgccaaagcgcgcgcgccagatgttcgacgaaatgcctgagcgaaact 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcaaatccggcatgccaaagcgcgcgcgccagatgttcgacgaaatgcctgagcgaaact 425
Query: 380 gtacccgtacagtgctatctttcaatgcccttttggctgcttaccttcactccaagcagt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtacccgtacagtgctatctttcaatgcccttttggctgcttaccttcactccaagcagt 485
Query: 440 accgtgtcgttgagcgcattttcaaggaggttcctggtgagatttctgtgaaacctgatt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 accgtgtcgttgagcgcattttcaaggaggttcctggtgagatttctgtgaaacctgatt 545
Query: 500 tggtgtcttacaatactgttattaaggcgttctgtaagagtaaggtgttcgaatccgcgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tggtgtcttacaatactgttattaaggcgttctgtaagagtaaggtgttcgaatccgcgg 605
Query: 560 tttcgatgcttgaggagatggagaagaatggtgtgagccctgatttgatcacgtttaaca 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tttcgatgcttgaggagatggagaagaatggtgtgagccctgatttgatcacgtttaaca 665
Query: 620 ctctgcttgatgggttgtacgctgagggtcgttttgaggaaggagagaaactgtggggac 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctctgcttgatgggttgtacgctgagggtcgttttgaggaaggagagaaactgtggggac 725
Query: 680 aaatgggtgggaagaatctttctcctgatatcaggagttacaatgccaggttgttgggat 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aaatgggtgggaagaatctttctcctgatatcaggagttacaatgccaggttgttgggat 785
Query: 740 tggctgtggagaagaaaacgggtgaagctgttgagtttcttcaggaaatggagaagaagg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tggctgtggagaagaaaacgggtgaagctgttgagtttcttcaggaaatggagaagaagg 845
Query: 800 atgtcaagcctgatctttttagcttgaatgctattatcaagggttttgtgaatgagggta 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 atgtcaagcctgatctttttagcttgaatgctattatcaagggttttgtgaatgagggta 905
Query: 860 atttggacgaagcgaagaagtggtttggcgaaatagagaaatctgagaatgaccctgata 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 atttggacgaagcgaagaagtggtttggcgaaatagagaaatctgagaatgaccctgata 965
Query: 920 agaacacttttgcaactcttgttcccttcctgtgtgagaagggtgatttgaagacagcca 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 agaacacttttgcaactcttgttcccttcctgtgtgagaagggtgatttgaagacagcca 1025
Query: 980 ttgatgtggtcaaggagatattcaacactaggtgtcgtgtaggtgcgccgttgctgcagc 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 ttgatgtggtcaaggagatattcaacactaggtgtcgtgtaggtgcgccgttgctgcagc 1085
Query: 1040 ttgttgtggataaactggtgagtgagtccatgctttccgaggcgaaggagattgtggaac 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 ttgttgtggataaactggtgagtgagtccatgctttccgaggcgaaggagattgtggaac 1145
Query: 1100 tagggaaaaccaacaggtac 1119
||||||||||||||||||||
Sbjct: 1146 tagggaaaaccaacaggtac 1165
>gnl|LJGI|BW632921 weakly similar to UniRef100_A7R6L1 Cluster: Chromosome undetermined
scaffold_1327, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1327,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (27%)
Length = 512
Score = 674 bits (340), Expect = 0.0
Identities = 340/340 (100%)
Strand = Plus / Plus
Query: 80 gcatcaagtcactctcgcaggacctgtacaaggaagtgaacttgaggaaactggtggaca 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gcatcaagtcactctcgcaggacctgtacaaggaagtgaacttgaggaaactggtggaca 232
Query: 140 agttcaagaaagcttgcgatgttgaccgtttccgaaccaaaaccggcatctacgaggaca 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agttcaagaaagcttgcgatgttgaccgtttccgaaccaaaaccggcatctacgaggaca 292
Query: 200 cggttcgccgcctcgccggcgccaaacagttccggggagtaatcgacatcctcgagcatc 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cggttcgccgcctcgccggcgccaaacagttccggggagtaatcgacatcctcgagcatc 352
Query: 260 agaagcagtattccgacttctccaaagaagggttctctgcgcgcctcatcactctctacg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agaagcagtattccgacttctccaaagaagggttctctgcgcgcctcatcactctctacg 412
Query: 320 gcaaatccggcatgccaaagcgcgcgcgccagatgttcgacgaaatgcctgagcgaaact 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcaaatccggcatgccaaagcgcgcgcgccagatgttcgacgaaatgcctgagcgaaact 472
Query: 380 gtacccgtacagtgctatctttcaatgcccttttggctgc 419
||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtacccgtacagtgctatctttcaatgcccttttggctgc 512
>gnl|LJGI|AV765255
Length = 586
Score = 168 bits (85), Expect = 5e-41
Identities = 161/185 (87%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 936 tcttgttcccttcctgtgtgagaagggtgatttgaagacagccattgatgtggtcaagga 995
|||||||||||||||||| ||||||||| |||| | || ||||||||||||||||| |
Sbjct: 302 tcttgttcccttcctgtgggagaagggtaatttaataccacccattgatgtggtcaagaa 243
Query: 996 gatattcaacactaggtgtcgtgtaggtgcgccgttgctgcagcttgttgtgg-ataaac 1054
||||||||| |||||| | ||||||| || ||||| || || ||| |||||| ||||||
Sbjct: 242 aatattcaaccctaggttttgtgtaggggccccgttcctccaactttttgtgggataaac 183
Query: 1055 tggtgagtgagtccatgctttccgaggcgaaggagattgtggaactagggaaaaccaaca 1114
||||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||
Sbjct: 182 tggtgagtgagtccatgctttccaaggcaaaggaaattgtggatttagggaaaaccaaca 123
Query: 1115 ggtac 1119
|||||
Sbjct: 122 ggtac 118