Miyakogusa Predicted Gene
- Lj4g3v0412640.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0412640.3 tr|B9IP66|B9IP66_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_573662 PE=4
SV=1,62.82,3e-19,SQUALENE MONOOXYGENASE,NULL; SE,Squalene
epoxidase,CUFF.48671.3
(315 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81169 similar to UniRef100_Q506K3 Cluster: Squalene m... 422 e-118
gnl|LJGI|TC67852 similar to UniRef100_A7QGY6 Cluster: Chromosome... 377 e-104
gnl|LJGI|TC68328 homologue to UniRef100_A7QGY6 Cluster: Chromoso... 145 2e-34
gnl|LJGI|TC63410 homologue to UniRef100_Q8GSM8 Cluster: Squalene... 70 9e-12
gnl|LJGI|TC72101 homologue to UniRef100_Q2HY08 Cluster: Squalene... 58 3e-08
>gnl|LJGI|TC81169 similar to UniRef100_Q506K3 Cluster: Squalene monooxygenase; n=1;
Datura inoxia|Rep: Squalene monooxygenase - Datura
innoxia (Downy thornapple) (Datura meteloides), partial
(13%)
Length = 378
Score = 422 bits (213), Expect = e-118
Identities = 213/213 (100%)
Strand = Plus / Plus
Query: 103 agcgtggttctccatttcttcgcggtggctatatatggcgttggccgacttctgaaacca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcgtggttctccatttcttcgcggtggctatatatggcgttggccgacttctgaaacca 60
Query: 163 tttccttctccgaaacgaatatggattggagctaggttgatttcaggtgcagcttgtatc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttccttctccgaaacgaatatggattggagctaggttgatttcaggtgcagcttgtatc 120
Query: 223 cttttccccattatcaaggctgaaggattaagacaaatgtttttcccagcaactgttcca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttttccccattatcaaggctgaaggattaagacaaatgtttttcccagcaactgttcca 180
Query: 283 gcatattacagaatgcctcctgtccattaagca 315
|||||||||||||||||||||||||||||||||
Sbjct: 181 gcatattacagaatgcctcctgtccattaagca 213
>gnl|LJGI|TC67852 similar to UniRef100_A7QGY6 Cluster: Chromosome chr3 scaffold_95,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_95, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 616
Score = 377 bits (190), Expect = e-104
Identities = 265/290 (91%)
Strand = Plus / Plus
Query: 26 ttgattatttgagccttggaagagttttctcagagggactagcatctctcctctctggac 85
|||||||||||||||||||||| |||||||||||||||| | || |||| |||||||| |
Sbjct: 103 ttgattatttgagccttggaagtgttttctcagagggaccaacagctctgctctctggtc 162
Query: 86 taaatcctcgtccattgagcgtggttctccatttcttcgcggtggctatatatggcgttg 145
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 163 taaatcctcgtccactgagcttagttctccatttcttcgcggtggctatatatggcgttg 222
Query: 146 gccgacttctgaaaccatttccttctccgaaacgaatatggattggagctaggttgattt 205
|||||||| ||| ||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 223 gccgacttatgataccatttccttctccaaaacggatatggattggagctagattgattt 282
Query: 206 caggtgcagcttgtatccttttccccattatcaaggctgaaggattaagacaaatgtttt 265
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 283 caggtgcagcaggtatcattttccccattatcaaggctgaaggagtaagacaaatgttct 342
Query: 266 tcccagcaactgttccagcatattacagaatgcctcctgtccattaagca 315
||||||||| || ||||||||||| ||| ||||||||||| ||||||||
Sbjct: 343 tcccagcaatggtgccagcatattatagagtgcctcctgtctattaagca 392
>gnl|LJGI|TC68328 homologue to UniRef100_A7QGY6 Cluster: Chromosome chr3 scaffold_95,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_95, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 616
Score = 145 bits (73), Expect = 2e-34
Identities = 220/269 (81%)
Strand = Plus / Plus
Query: 26 ttgattatttgagccttggaagagttttctcagagggactagcatctctcctctctggac 85
|||||||||||| |||||| | ||||||||||| |||| | | |||| |||||||| |
Sbjct: 14 ttgattatttgacacttggaggtgttttctcagatggaccaatagctcttctctctggtc 73
Query: 86 taaatcctcgtccattgagcgtggttctccatttcttcgcggtggctatatatggcgttg 145
||||||| ||||| ||| | |||||||| ||||| || |||||||| ||||| ||||
Sbjct: 74 taaatccaaagccattaagcttagttctccacttctttgccgtggctatttatggtgttg 133
Query: 146 gccgacttctgaaaccatttccttctccgaaacgaatatggattggagctaggttgattt 205
| || | || ||||||||||||||| ||||| || |||||||||||||| |||||||
Sbjct: 134 gtcgtttattggtaccatttccttctccaaaacgcatgtggattggagctagattgattt 193
Query: 206 caggtgcagcttgtatccttttccccattatcaaggctgaaggattaagacaaatgtttt 265
| |||||| || |||| | || || ||||| |||||||||||| | ||||||||||| |
Sbjct: 194 cgggtgcatctggtattatatttcctattattaaggctgaaggaatcagacaaatgttct 253
Query: 266 tcccagcaactgttccagcatattacaga 294
|||||| |||||| || ||||||||||||
Sbjct: 254 tcccagtaactgtgcctgcatattacaga 282
>gnl|LJGI|TC63410 homologue to UniRef100_Q8GSM8 Cluster: Squalene monooxygenase 1;
n=1; Medicago truncatula|Rep: Squalene monooxygenase 1 -
Medicago truncatula (Barrel medic), partial (33%)
Length = 666
Score = 69.9 bits (35), Expect = 9e-12
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 86 taaatcctcgtccattgagcgtggttctccatttcttcgcggtggctatatatggcgttg 145
|||| ||||| || |||||| |||||||||||||||| || || || |||||||| ||||
Sbjct: 288 taaaccctcggcccttgagcttggttctccatttctttgccgttgcaatatatggggttg 347
Query: 146 gccgacttctgaaaccatttccttctccgaaacgaatatggattgga 192
|||| | || |||||||||||| || ||||| ||||||||||||
Sbjct: 348 gccgtttactcctaccatttccttcccctaaacgcatatggattgga 394
>gnl|LJGI|TC72101 homologue to UniRef100_Q2HY08 Cluster: Squalene epoxidase; n=1;
Medicago sativa|Rep: Squalene epoxidase - Medicago
sativa (Alfalfa), partial (28%)
Length = 697
Score = 58.0 bits (29), Expect = 3e-08
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 86 taaatcctcgtccattgagcgtggttctccatttcttcgcggtggctatatatggcgttg 145
|||| |||||||| |||||| |||||||||||||||| || || ||| ||| ||| || |
Sbjct: 231 taaaccctcgtccgttgagcttggttctccatttctttgctgttgctgtatttggtgtcg 290
Query: 146 gccgacttctgaaaccatttccttctccgaaacgaatatggattggagc 194
|||| | || |||||||||||| || || || ||||||||||||||
Sbjct: 291 gccgtttactattaccatttccttcacctaagcggatatggattggagc 339