Miyakogusa Predicted Gene
- Lj4g3v0409420.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0409420.1 Non Chatacterized Hit- tr|I1ME28|I1ME28_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50040
PE,63.1,0,BROMODOMAIN_2,Bromodomain; no description,Bromodomain;
BROMODOMAIN-CONTAINING PROTEIN,NULL; FALZ-REL,CUFF.47060.1
(1578 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62837 similar to UniRef100_A7QS98 Cluster: Chromosome... 975 0.0
gnl|LJGI|TC82664 similar to UniRef100_Q5K541 Cluster: Bromodomai... 656 0.0
gnl|LJGI|TC75935 similar to UniRef100_A1XX44 Cluster: Chloroplas... 159 6e-38
gnl|LJGI|AU089074 similar to UniRef100_A1XX44 Cluster: Chloropla... 113 3e-24
gnl|LJGI|TC66067 similar to UniRef100_A7QS98 Cluster: Chromosome... 54 3e-06
>gnl|LJGI|TC62837 similar to UniRef100_A7QS98 Cluster: Chromosome chr3 scaffold_157,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_157, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 754
Score = 975 bits (492), Expect = 0.0
Identities = 509/515 (98%), Gaps = 6/515 (1%)
Strand = Plus / Plus
Query: 1 atggcgtcggcggtcttagccaaccgtaacgaaccgaactggccgcagcagcacagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atggcgtcggcggtcttagccaaccgtaacgaaccgaactggccgcagcagcacagaggc 299
Query: 61 ggtgcaacagcaacaggattcatggcgaaaacaccctaccctaattcaaacc------ct 114
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 300 ggtgcaacagcaacaggattcatggcgaaaacaccctaccctaattcaaaccctaaccct 359
Query: 115 aaccctaaccctaaatttctcaacaacaagaggactcaatcaccttccgatgacgcttcc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaccctaaccctaaatttctcaacaacaagaggactcaatcaccttccgatgacgcttcc 419
Query: 175 tccatcaatcgccgatcaaacgatgccgtctccaacggctattccaactacgccaccttc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tccatcaatcgccgatcaaacgatgccgtctccaacggctattccaactacgccaccttc 479
Query: 235 aacatcgcctcgtacagcaagaaggagctcagcgagctcaaggcgcgtcttcaatcggag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aacatcgcctcgtacagcaagaaggagctcagcgagctcaaggcgcgtcttcaatcggag 539
Query: 295 ctcgaaatcgttcgccaggtcaagctccgattcgaggccgtcgagtttcagccccggccg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctcgaaatcgttcgccaggtcaagctccgattcgaggccgtcgagtttcagccccggccg 599
Query: 355 atgaaccacaaccacaagaagcccgtgagcaagaaggttgccggcaccaagcggccgttt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atgaaccacaaccacaagaagcccgtgagcaagaaggttgccggcaccaagcggccgttt 659
Query: 415 ccggcgaaggatttgaagcggtcgcagtcggaggttgggaacatgatgaagggttgtggc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccggcgaaggatttgaagcggtcgcagtcggaggttgggaacatgatgaagggttgtggc 719
Query: 475 caggttctgcagaagctgatgaagcataaattcgg 509
|||||||||||||||||||||||||||||||||||
Sbjct: 720 caggttctgcagaagctgatgaagcataaattcgg 754
>gnl|LJGI|TC82664 similar to UniRef100_Q5K541 Cluster: Bromodomain-containing
RNA-binding protein 2; n=1; Nicotiana tabacum|Rep:
Bromodomain-containing RNA-binding protein 2 - Nicotiana
tabacum (Common tobacco), partial (26%)
Length = 1128
Score = 656 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Plus
Query: 1248 ggaatcaccagctagggagaatgttgatgatgatgcagctgaaccaccaattgaagggaa 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ggaatcaccagctagggagaatgttgatgatgatgcagctgaaccaccaattgaagggaa 755
Query: 1308 gaagcaaaagaagatagaagcagctggggatgaagatgttgacattggagacgagatgcc 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaagcaaaagaagatagaagcagctggggatgaagatgttgacattggagacgagatgcc 815
Query: 1368 aatgaacaatgaagatgttgacattggggatgagatgccaatgaacaacttcccacctgt 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aatgaacaatgaagatgttgacattggggatgagatgccaatgaacaacttcccacctgt 875
Query: 1428 ggagattgagaaagataaagatgtcgccggaggccatgcgagtagttctagtagctctgg 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ggagattgagaaagataaagatgtcgccggaggccatgcgagtagttctagtagctctgg 935
Query: 1488 cagttctggcagtgattcctcatcatcaagtgattcggactctggtagctcatcagggag 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 cagttctggcagtgattcctcatcatcaagtgattcggactctggtagctcatcagggag 995
Query: 1548 tgattctgaagcggagaatgggaatttgtag 1578
|||||||||||||||||||||||||||||||
Sbjct: 996 tgattctgaagcggagaatgggaatttgtag 1026
Score = 424 bits (214), Expect = e-118
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 1036 aacaagagggaaatgaacatggaggaaaagcaaaggttgggaatgatgttgcagagtttg 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacaagagggaaatgaacatggaggaaaagcaaaggttgggaatgatgttgcagagtttg 444
Query: 1096 ccatccgagaaattggagcaggtagtgcagatcataaggaggagaaatgggaatttgaag 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatccgagaaattggagcaggtagtgcagatcataaggaggagaaatgggaatttgaag 504
Query: 1156 caggatggggatgaaatcgagcttgatattgaagctgttgatacagagaccctttgggag 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggatggggatgaaatcgagcttgatattgaagctgttgatacagagaccctttgggag 564
Query: 1216 cttgatcgttttgtgaccaattggagaaagatgg 1249
||||||||||||||||||||||||||||||||||
Sbjct: 565 cttgatcgttttgtgaccaattggagaaagatgg 598
Score = 258 bits (130), Expect = 9e-68
Identities = 147/153 (96%), Gaps = 6/153 (3%)
Strand = Plus / Plus
Query: 1 atggcgtcggcggtcttagccaaccgtaacgaaccgaactggccgcagcagcacagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggcgtcggcggtcttagccaaccgtaacgaaccgaactggccgcagcagcacagaggc 300
Query: 61 ggtgcaacagcaacaggattcatggcgaaaacaccctaccctaattca------aaccct 114
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 ggtgcaacagcaacaggattcatggcgaaaacaccctaccctaattcaaaccctaaccct 360
Query: 115 aaccctaaccctaaatttctcaacaacaagagg 147
|||||||||||||||||||||||||||||||||
Sbjct: 361 aaccctaaccctaaatttctcaacaacaagagg 393
>gnl|LJGI|TC75935 similar to UniRef100_A1XX44 Cluster: Chloroplast
bromodomain-containing protein; n=1; Pachysandra
terminalis|Rep: Chloroplast bromodomain-containing
protein - Pachysandra terminalis, partial (36%)
Length = 1253
Score = 159 bits (80), Expect = 6e-38
Identities = 197/236 (83%)
Strand = Plus / Plus
Query: 1005 gaagcatccgaaaccgaaggcgagggaccctaacaagagggaaatgaacatggaggaaaa 1064
|||||| |||||||||||||| | ||| || || |||||||| ||||| | ||||| ||
Sbjct: 276 gaagcaaccgaaaccgaaggccaaggatccgaataagagggacatgaatcttgaggagaa 335
Query: 1065 gcaaaggttgggaatgatgttgcagagtttgccatccgagaaattggagcaggtagtgca 1124
||| | | |||| | |||||||||||| ||||| |||||| |||||||||| |||||
Sbjct: 336 gcacaagctggggcttgggttgcagagtttaccatcagagaaaatggagcaggtggtgca 395
Query: 1125 gatcataaggaggagaaatgggaatttgaagcaggatggggatgaaatcgagcttgatat 1184
||| |||| || ||| |||||| |||||||||| ||||||||||| || ||||| |||||
Sbjct: 396 gattataaagaagaggaatgggcatttgaagcaagatggggatgagattgagctggatat 455
Query: 1185 tgaagctgttgatacagagaccctttgggagcttgatcgttttgtgaccaattgga 1240
||| |||||||| | ||||||||||||||||||||||| || ||||| |||||||
Sbjct: 456 tgaggctgttgacaatgagaccctttgggagcttgatcgattggtgacaaattgga 511
Score = 113 bits (57), Expect = 3e-24
Identities = 155/187 (82%), Gaps = 3/187 (1%)
Strand = Plus / Plus
Query: 1376 atgaagatgttgacattggggatgagatgccaatgaacaacttcccacctgtggagattg 1435
|||| ||||| |||||||| || ||||||||||||| | || || || || |||||||
Sbjct: 671 atgaggatgtagacattggcgacgagatgccaatgagtgagtttcccccagtagagattg 730
Query: 1436 agaaagataaagatgtcgccggaggccatgcgagtagt---tctagtagctctggcagtt 1492
||||||| ||||||||||| | |||||| ||||||||| ||| ||||||| ||||||
Sbjct: 731 agaaagacaaagatgtcgctgcaggccacgcgagtagtagttctggtagctcgagcagtt 790
Query: 1493 ctggcagtgattcctcatcatcaagtgattcggactctggtagctcatcagggagtgatt 1552
| |||||| |||||| ||||| ||||||||||| || || || || |||||||||||||
Sbjct: 791 caagcagtggttcctcgtcatctagtgattcggattcggggagttcctcagggagtgatt 850
Query: 1553 ctgaagc 1559
|||||||
Sbjct: 851 ctgaagc 857
Score = 65.9 bits (33), Expect = 7e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1324 gaagcagctggggatgaagatgttgacattggagacgagatgccaatga 1372
|||||||| |||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 658 gaagcagcaggggatgaggatgtagacattggcgacgagatgccaatga 706
>gnl|LJGI|AU089074 similar to UniRef100_A1XX44 Cluster: Chloroplast
bromodomain-containing protein; n=1; Pachysandra
terminalis|Rep: Chloroplast bromodomain-containing
protein - Pachysandra terminalis, partial (19%)
Length = 244
Score = 113 bits (57), Expect = 3e-24
Identities = 189/233 (81%)
Strand = Plus / Plus
Query: 475 caggttctgcagaagctgatgaagcataaattcgggtggatcttcaacgttcctgttgat 534
|||||| |||||||||| |||||||| || |||||||||||||| ||||| ||||||
Sbjct: 10 caggttttgcagaagcttatgaagcacaagcatgggtggatcttcaatgttcccgttgat 69
Query: 535 gttgtgagtttggggcttcatgattactatgatatagtgaagaaacccatggatctggga 594
| ||| | |||| |||||||||||||| || || | ||||||||||||||||||||
Sbjct: 70 gctgttggaatgggtcttcatgattactacgagatcatcaagaaacccatggatctgggt 129
Query: 595 actgtgaaatcgaatctggccaagaatgtgtatgctacaccgtcagattttgcgtccgat 654
|| |||||| ||||||| | ||||| ||||| ||||| || || ||||| || |||
Sbjct: 130 acggtgaaagcgaatctctcgaagaacgtgtacgctacgcctgaggaatttgcatcggat 189
Query: 655 gtgcggttgactttcaacaatgcattggcctacaaccctaagggtcacgatgt 707
||| | ||||| |||||||||||| || | || ||||||||||| ||||||||
Sbjct: 190 gtgagattgacgttcaacaatgcactgacttataaccctaagggccacgatgt 242
>gnl|LJGI|TC66067 similar to UniRef100_A7QS98 Cluster: Chromosome chr3 scaffold_157,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_157, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 695
Score = 54.0 bits (27), Expect = 3e-06
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 381 gagcaagaaggttgccggcaccaagcggccgtttccggcgaaggatttgaagcggtcgca 440
||||||||||||| |||||| |||||| || || |||| ||||||||| || || |||||
Sbjct: 613 gagcaagaaggtttccggcaacaagcgtcccttgccggtgaaggatttcaaacgatcgca 672
Query: 441 gtcggaggttg 451
| ||||||||
Sbjct: 673 tttggaggttg 683