Miyakogusa Predicted Gene
- Lj4g3v0385920.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0385920.1 tr|D7KHT7|D7KHT7_ARALL KH domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,26.57,2e-18,Eukaryotic type KH-domain (KH-domain type
I),NULL; KH_TYPE_1,K Homology domain, type 1; K homology
R,CUFF.47034.1
(1758 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79337 weakly similar to UniRef100_A7QM31 Cluster: Chr... 1586 0.0
gnl|LJGI|BW598217 weakly similar to UniRef100_A7QM31 Cluster: Ch... 626 e-178
gnl|LJGI|TC75431 similar to UniRef100_A2Q1N9 Cluster: KH, type 1... 80 5e-14
gnl|LJGI|DC595418 similar to UniRef100_A2Q1N9 Cluster: KH, type ... 74 3e-12
gnl|LJGI|AV765588 68 2e-10
>gnl|LJGI|TC79337 weakly similar to UniRef100_A7QM31 Cluster: Chromosome undetermined
scaffold_123, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_123,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (16%)
Length = 801
Score = 1586 bits (800), Expect = 0.0
Identities = 800/800 (100%)
Strand = Plus / Plus
Query: 12 gacccactttaacggaccctccaacgggccaacccaggtcaccttccgcctgctctgcca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacccactttaacggaccctccaacgggccaacccaggtcaccttccgcctgctctgcca 61
Query: 72 cgcttcacgcgtcggcagcctcatcggaaaagccggcgtcgtcatcaagtccctccagca 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgcttcacgcgtcggcagcctcatcggaaaagccggcgtcgtcatcaagtccctccagca 121
Query: 132 agccacggcggccagaatccgaattgacgacgccccgcccgattcccccgaccgggtcat 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 agccacggcggccagaatccgaattgacgacgccccgcccgattcccccgaccgggtcat 181
Query: 192 ccgtatcatctccaagctcgacggcggcgaggcgctgctccgggtctttgagaaggtgct 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ccgtatcatctccaagctcgacggcggcgaggcgctgctccgggtctttgagaaggtgct 241
Query: 252 tgatgtcgccgccgaggctgacgagtttgacgtcctggatagggtggtttgctgccggct 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgatgtcgccgccgaggctgacgagtttgacgtcctggatagggtggtttgctgccggct 301
Query: 312 gctgtcggaccctgcccaggtcggcgccgtcatcggcaagggagggaaggtggtggagaa 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gctgtcggaccctgcccaggtcggcgccgtcatcggcaagggagggaaggtggtggagaa 361
Query: 372 gattagggcggagactggttgtaagattagggttttcagtgacaagttgcctgctggtac 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gattagggcggagactggttgtaagattagggttttcagtgacaagttgcctgctggtac 421
Query: 432 taaaccctcagatgaaatcattgagatacaaggtaaggtgtcatctgtgaagaaggccct 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taaaccctcagatgaaatcattgagatacaaggtaaggtgtcatctgtgaagaaggccct 481
Query: 492 tgtggctgttgctagccggattgaagaatgtcttccatttgatagaacgaagacgacggc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgtggctgttgctagccggattgaagaatgtcttccatttgatagaacgaagacgacggc 541
Query: 552 aagcagaccttatgaagggtttcagcatggaacttttgatgttccaacagaaacttgcac 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aagcagaccttatgaagggtttcagcatggaacttttgatgttccaacagaaacttgcac 601
Query: 612 agataagcacatagatcacagacagcagaagagctctactttgcctgatttatcgagtag 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agataagcacatagatcacagacagcagaagagctctactttgcctgatttatcgagtag 661
Query: 672 gtataatggcaatgcctatggagttaactcattgtcagctgaagtcaacagagtctcggc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtataatggcaatgcctatggagttaactcattgtcagctgaagtcaacagagtctcggc 721
Query: 732 ccttgatccaagagcacttcagaaggaagttacctttagaattctttgttcaaatgatag 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ccttgatccaagagcacttcagaaggaagttacctttagaattctttgttcaaatgatag 781
Query: 792 agttggtgctgtaattggaa 811
||||||||||||||||||||
Sbjct: 782 agttggtgctgtaattggaa 801
>gnl|LJGI|BW598217 weakly similar to UniRef100_A7QM31 Cluster: Chromosome undetermined
scaffold_123, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_123, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(6%)
Length = 478
Score = 626 bits (316), Expect = e-178
Identities = 387/408 (94%), Gaps = 2/408 (0%)
Strand = Plus / Plus
Query: 1181 ataatgatcaattggtacagatatcaggacagttcttaaatgttcaagatgcattatata 1240
||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 72 ataatgatcaaatggtacacatatcatgacagttctgaaatgttcaagatgcattatata 131
Query: 1241 atgctactggcagactgcgagataatctttttgtcagcacacaaaacaac-ggtggatca 1299
| |||||||| |||| ||||||||||| ||||| |||||||||| ||||| |||||||||
Sbjct: 132 aagctactggaagacagcgagataatcattttgacagcacacaatacaactggtggatca 191
Query: 1300 aagagcctttcctctcacagtctcagatccttgtctcaaagtatggatcatctttcactt 1359
|||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 192 aagaacctttcctctcg-agtctcatatccttgtctcaaagtatggatcatctttcactt 250
Query: 1360 tctcaaaattcaaatcatccttcttcaccatggtcatggacaccaaagtcagcgggcgcg 1419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 251 tctcaaaattcaaatcatccttcttcaccatggtcatggacaccaaagtcagcgagcgcg 310
Query: 1420 ataaattctagaggcagcaatgatgttggcaggggattgactcctcaaaacggtgaccta 1479
|||||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 311 ataaattctatacgcatcaatgatgttggcaagggattgactcctcaaaacggtgaccta 370
Query: 1480 gagcttgtcagtgggagtaaaaccgccattgtgagtaaaactgccattgtgactaataca 1539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cagcttgtcagtgggagtaaaaccgccattgtgagtaaaactgccattgtgactaataca 430
Query: 1540 accgtggagattatggtttccaatgatatcattgactctgtttacgga 1587
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 accgtggagattatggtttccaatgatatcattgactctgtttacgga 478
>gnl|LJGI|TC75431 similar to UniRef100_A2Q1N9 Cluster: KH, type 1; n=1; Medicago
truncatula|Rep: KH, type 1 - Medicago truncatula (Barrel
medic), partial (24%)
Length = 798
Score = 79.8 bits (40), Expect = 5e-14
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1677 tattgttatatccggcacacctgatgaaactcaagcagcccagagccttctccaagcatt 1736
|||||| |||||||| ||||||||||||| ||||| || ||||||||||||||| ||||
Sbjct: 474 tattgtcatatccggttcacctgatgaaacccaagcggcacagagccttctccaatcatt 533
Query: 1737 tattctcaacggatcatgac 1756
|||||| | ||||||||||
Sbjct: 534 tattcttagtggatcatgac 553
>gnl|LJGI|DC595418 similar to UniRef100_A2Q1N9 Cluster: KH, type 1; n=1; Medicago
truncatula|Rep: KH, type 1 - Medicago truncatula (Barrel
medic), partial (7%)
Length = 119
Score = 73.8 bits (37), Expect = 3e-12
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 1219 aatgttcaagatgcattatataatgctactggcagactgcgagataatctttttgtcagc 1278
||||| |||||||||||||||||||| ||||| ||||| ||||||||||||| | ||||
Sbjct: 8 aatgtgcaagatgcattatataatgcaactggtagactaagagataatcttttgggcagc 67
Query: 1279 acaca 1283
|||||
Sbjct: 68 acaca 72
>gnl|LJGI|AV765588
Length = 230
Score = 67.9 bits (34), Expect = 2e-10
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1725 tctccaagcatttattctcaacggatcatgacta 1758
||||||||||||||||||||||||||||||||||
Sbjct: 230 tctccaagcatttattctcaacggatcatgacta 197