Miyakogusa Predicted Gene
- Lj4g3v0365560.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0365560.1 tr|G7JV62|G7JV62_MEDTR RING-H2 finger protein
ATL1O OS=Medicago truncatula GN=MTR_4g093830 PE=4
SV=1,56.46,0,RING/U-box,NULL; ZF_RING_2,Zinc finger, RING-type; RING
FINGER PROTEIN 6/12/38,NULL; Ring finger,Zin,CUFF.47140.1
(1080 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74649 similar to UniRef100_Q8LFY8 Cluster: RING-H2 fi... 712 0.0
gnl|LJGI|TC60131 similar to UniRef100_A7Q662 Cluster: Chromosome... 204 8e-52
gnl|LJGI|TC78801 similar to UniRef100_A7PC80 Cluster: Chromosome... 76 5e-13
>gnl|LJGI|TC74649 similar to UniRef100_Q8LFY8 Cluster: RING-H2 finger protein ATL1O;
n=1; Arabidopsis thaliana|Rep: RING-H2 finger protein
ATL1O - Arabidopsis thaliana (Mouse-ear cress), partial
(5%)
Length = 517
Score = 712 bits (359), Expect = 0.0
Identities = 393/410 (95%)
Strand = Plus / Plus
Query: 1 atgggacttcatcacagaaggctgttgtcacctaacgacaactgtgaactcatctgcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atgggacttcatcacagaaggctgttgtcacctaacgacaactgtgaactcatctgcaat 167
Query: 61 gaggaagaaaagtcttgttcatcaaactgccaagattgcatcaaaaactgccttgaactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gaggaagaaaagtcttgttcatcaaactgccaagattgcatcaaaaactgccttgaactt 227
Query: 121 tcatcttctctgagtcaaaccaagcacaaaacctccacctacttgatcatcggtttctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tcatcttctctgagtcaaaccaagcacaaaacctccacctacttgatcatcggtttctca 287
Query: 181 atcgtggctgcagttttcttcgccatgtgctgctatgctatctacgtcaagttcatctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atcgtggctgcagttttcttcgccatgtgctgctatgctatctacgtcaagttcatctcc 347
Query: 241 ccatggaacnnnnnnnnnnnnnnnnnaagaacaacaaccttagcactgcaacaaacagag 300
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 348 ccatggaacaggaggaggaggaggagaagaacaacaaccttagcactgcaacaaacagag 407
Query: 301 gaatctttcaccgacgaggaacatggtcctgtggttgaccaggatcaccatatctggttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaatctttcaccgacgaggaacatggtcctgtggttgaccaggatcaccatatctggttc 467
Query: 361 atacgcaccaccggtctgcaacaatcgattatcagtgcaatcacggtttg 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atacgcaccaccggtctgcaacaatcgattatcagtgcaatcacggtttg 517
>gnl|LJGI|TC60131 similar to UniRef100_A7Q662 Cluster: Chromosome undetermined
scaffold_55, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_55, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (25%)
Length = 1546
Score = 204 bits (103), Expect = 8e-52
Identities = 190/219 (86%)
Strand = Plus / Plus
Query: 373 ggtctgcaacaatcgattatcagtgcaatcacggtttgtgagtacaagaaaggtgagggg 432
||||| || ||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct: 502 ggtcttcaccaatcgattatcaaggcaatcacggtttgcaggtataagaaaggtgagggg 561
Query: 433 ttggttgaaggaactgattgctctgtttgcttgagcgagtttgaagaaggtgagaatctc 492
||| |||||||||| || ||||||||||||||||| |||||| |||| |||||| | |
Sbjct: 562 ttgattgaaggaacagagtgctctgtttgcttgagtgagtttcaagagagtgagagtttg 621
Query: 493 aggcttttgcctaagtgtaaccatgcttttcatttgatttgtattgatacttggctgaga 552
|| ||||||||||||||| |||||||||||||||| |||||||||||| ||||| |
Sbjct: 622 agacttttgcctaagtgtcaccatgcttttcatttaccttgtattgatacatggcttaat 681
Query: 553 tcgcataccaattgccccatgtgtcgtgctccgattgtt 591
|| ||||||||||||||||||||||||||||| ||||||
Sbjct: 682 tctcataccaattgccccatgtgtcgtgctcccattgtt 720
Score = 61.9 bits (31), Expect = 8e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 988 atgaagaggtcgcgatcctacaatggtaagcatctgctatcctggtatagccgcagccag 1047
||||||||||| || ||||||||||| || | || || ||||||||||||||||| |||
Sbjct: 1195 atgaagaggtcacgttcctacaatgggaaataccttctgtcctggtatagccgcagtcag 1254
Query: 1048 aaaaagccaaatgct 1062
|| |||| |||||||
Sbjct: 1255 aagaagcaaaatgct 1269
Score = 52.0 bits (26), Expect = 7e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 823 cctaggagatcagtgtctcttgattctgcttctgctgctaagatcaatcttgct 876
|||| ||||||||| |||||||||||| ||||| ||| || ||||||||||||
Sbjct: 958 cctaagagatcagtttctcttgattctttttctgttgcaaatatcaatcttgct 1011
>gnl|LJGI|TC78801 similar to UniRef100_A7PC80 Cluster: Chromosome chr2 scaffold_11,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_11, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (66%)
Length = 1145
Score = 75.8 bits (38), Expect = 5e-13
Identities = 137/170 (80%)
Strand = Plus / Plus
Query: 413 agtacaagaaaggtgaggggttggttgaaggaactgattgctctgtttgcttgagcgagt 472
||||||||||||| | || || ||||| | ||| |||||||| ||||| || |||||||
Sbjct: 403 agtacaagaaaggcaatggtttagttgaggtaacggattgctccgtttgtttaagcgagt 462
Query: 473 ttgaagaaggtgagaatctcaggcttttgcctaagtgtaaccatgcttttcatttgattt 532
|| |||| ||||||| | | ||||||||||| ||||| | ||||||||||||| | | ||
Sbjct: 463 ttcaagacggtgagagtattaggcttttgccaaagtgcagccatgcttttcatctcaatt 522
Query: 533 gtattgatacttggctgagatcgcataccaattgccccatgtgtcgtgct 582
| ||||| || ||||| | ||| || |||||||||| | |||||||||
Sbjct: 523 gcattgacacatggctcaaatctcactccaattgccctctttgtcgtgct 572