Miyakogusa Predicted Gene
- Lj4g3v0353460.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0353460.1 tr|G7L5N1|G7L5N1_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g078040 PE=4 SV=1,67.86,0.000000000004,F-box,F-box
domain, cyclin-like; no description,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; FBOX,F-box do,88081_g.1
(253 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59517 weakly similar to UniRef100_Q2HRF5 Cluster: Cyc... 480 e-135
gnl|LJGI|BG662160 weakly similar to UniRef100_A7PQD5 Cluster: Ch... 129 9e-30
gnl|LJGI|DC598731 similar to UniRef100_Q2HS69 Cluster: Cyclin-li... 58 3e-08
>gnl|LJGI|TC59517 weakly similar to UniRef100_Q2HRF5 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (42%)
Length = 1382
Score = 480 bits (242), Expect = e-135
Identities = 242/242 (100%)
Strand = Plus / Plus
Query: 1 atgaaaccgccaccggttctccctgaagaactcgttgaagaaatcttatcttttcttccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 atgaaaccgccaccggttctccctgaagaactcgttgaagaaatcttatcttttcttccg 119
Query: 61 gtgaaatctctagtgcgattcaagtctgtgtcaaagtcatggaactctttcatctccggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gtgaaatctctagtgcgattcaagtctgtgtcaaagtcatggaactctttcatctccggt 179
Query: 121 tcccaattcatcaaactccaccttcaccgatcgtattccacaagaaacgcagatttcgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tcccaattcatcaaactccaccttcaccgatcgtattccacaagaaacgcagatttcgcc 239
Query: 181 gcccacttccgctcactgaaaaaccgttcagccattgcagcaactccaattcgtgtccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gcccacttccgctcactgaaaaaccgttcagccattgcagcaactccaattcgtgtccct 299
Query: 241 ga 242
||
Sbjct: 300 ga 301
>gnl|LJGI|BG662160 weakly similar to UniRef100_A7PQD5 Cluster: Chromosome chr18
scaffold_24, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_24, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (12%)
Length = 430
Score = 129 bits (65), Expect = 9e-30
Identities = 142/167 (85%), Gaps = 3/167 (1%)
Strand = Plus / Plus
Query: 17 ttctccctgaagaactcgttgaagaaatcttatcttttcttccggtgaaatctctagtgc 76
||||||||||||||||| ||||||||| || | ||||||||||||||||| ||||
Sbjct: 6 ttctccctgaagaactccggctagaaatcttgtcatggcttccggtgaaatctctggtgc 65
Query: 77 gattcaagtctgtgtcaaagtcatggaactctttcatctccggttcccaattcatcaaac 136
|||||| || |||||| ||||||||||| ||| ||||||||| ||| |||||||||||||
Sbjct: 66 gattcaggtgtgtgtctaagtcatggaagtctatcatctccgattctcaattcatcaaac 125
Query: 137 tccaccttcaccgatcgtatt---ccacaagaaacgcagatttcgcc 180
|||||||||| ||||| | || | ||||||||| |||||||||||
Sbjct: 126 tccaccttcatcgatcatcttctacaacaagaaacacagatttcgcc 172
>gnl|LJGI|DC598731 similar to UniRef100_Q2HS69 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (14%)
Length = 592
Score = 58.0 bits (29), Expect = 3e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 40 gaaatcttatcttttcttccggtgaaatctctagtgcgattcaagtctgtgtcaaagtca 99
||||||||||| | |||| || |||||||| |||||||||| || ||| || ||||||
Sbjct: 64 gaaatcttatcatgggttcctgtaaaatctctggtgcgattcaggtgtgtatccaagtca 123
Query: 100 tggaactctttcatctc 116
||||||||| |||||||
Sbjct: 124 tggaactctctcatctc 140