Miyakogusa Predicted Gene

Lj4g3v0343330.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0343330.1 Non Chatacterized Hit- tr|B9G7N1|B9G7N1_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,40.35,0.012,ABC2_membrane,ABC-2 type transporter; ATP-BINDING
CASSETTE TRANSPORTER PLANT,NULL; ATP-BINDING CASSE,CUFF.46988.1
         (390 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57804 similar to UniRef100_A7QT46 Cluster: Chromosome...    64   7e-10
gnl|LJGI|TC72107 similar to UniRef100_A7PAW2 Cluster: Chromosome...    52   3e-06

>gnl|LJGI|TC57804 similar to UniRef100_A7QT46 Cluster: Chromosome undetermined
           scaffold_165, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_165,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (23%)
          Length = 811

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                       
Query: 7   cgtgatctaggctactactggttccgccttgtcgtatatattgcattgggtttaagtata 66
           |||||||||||||| |||||||| ||||||| | | |||||||| |||| | ||||| ||
Sbjct: 711 cgtgatctaggctattactggttacgccttggcatctatattgccttggctataagtgta 770

                       
Query: 67  gccactgtcttc 78
           |||||| |||||
Sbjct: 771 gccactctcttc 782


>gnl|LJGI|TC72107 similar to UniRef100_A7PAW2 Cluster: Chromosome chr16 scaffold_10,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_10, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (51%)
          Length = 1592

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 163 attggtggattcccttcctttgtggaagaaatgaaggt 200
           ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 349 attggtggattcccttcatttgttgaagacatgaaggt 386