Miyakogusa Predicted Gene
- Lj4g3v0340930.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0340930.1 Non Chatacterized Hit- tr|K4BNG5|K4BNG5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,47.73,4e-19,Zn-binding ribosomal proteins,Ribosomal protein,
zinc-binding domain; rpmF_bact: ribosomal protein L,CUFF.47004.1
(372 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS319632 similar to UniRef100_Q944L5 Cluster: At1g26740... 589 e-168
gnl|LJGI|TC58561 similar to UniRef100_Q944L5 Cluster: At1g26740/... 589 e-168
gnl|LJGI|GO025513 121 3e-27
>gnl|LJGI|FS319632 similar to UniRef100_Q944L5 Cluster: At1g26740/T24P13_11; n=1;
Arabidopsis thaliana|Rep: At1g26740/T24P13_11 -
Arabidopsis thaliana (Mouse-ear cress), partial (43%)
Length = 818
Score = 589 bits (297), Expect = e-168
Identities = 344/361 (95%), Gaps = 9/361 (2%)
Strand = Plus / Plus
Query: 12 attcgcgattctcaggggcaatgggaggaaccttttagggttcaataggttgtttcattc 71
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 342 attcgcgattctcaggggcaatgggaggagccttttagggttcaataggttgtttcattc 401
Query: 72 cgtgcctcaagctcctcctttagttgggagcattgacattggagttccgtcatcgcaacc 131
||||||| |||||| ||| |||||||||||||||||||| |||||||||||
Sbjct: 402 ggtgcctc---------ctttagctggaagcattgacattggagttccctcatcgcaacc 452
Query: 132 ggttttgcctgagtttacttccccgagtttctcttttggtgattctatggagctcatggc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggttttgcctgagtttacttccccgagtttctcttttggtgattctatggagctcatggc 512
Query: 192 tgtccccaaaaagaagatttctaagtctagaagaggaattagaaatggaccaaaagcttt 251
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 513 tgtccccaaaaggaagatttctaagtctagaagaggaataagaaatggaccaaaagcttt 572
Query: 252 gaaacctattcatgtgcttgtcctgtgcaagggttgtggtcgtgtccggcttccacacta 311
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaaacctattcctgtgcttgtcctgtgcaagggttgtggtcgtgtccggcttccacacta 632
Query: 312 ctactgctgtagtgggaaaccaaaccacgatcatactggtgagcagaatggtcgaaactg 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctactgctgtagtgggaaaccaaaccacgatcatactggtgagcagaatggtcgaaactg 692
Query: 372 a 372
|
Sbjct: 693 a 693
>gnl|LJGI|TC58561 similar to UniRef100_Q944L5 Cluster: At1g26740/T24P13_11; n=1;
Arabidopsis thaliana|Rep: At1g26740/T24P13_11 -
Arabidopsis thaliana (Mouse-ear cress), partial (43%)
Length = 892
Score = 589 bits (297), Expect = e-168
Identities = 344/361 (95%), Gaps = 9/361 (2%)
Strand = Plus / Plus
Query: 12 attcgcgattctcaggggcaatgggaggaaccttttagggttcaataggttgtttcattc 71
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 259 attcgcgattctcaggggcaatgggaggagccttttagggttcaataggttgtttcattc 318
Query: 72 cgtgcctcaagctcctcctttagttgggagcattgacattggagttccgtcatcgcaacc 131
||||||| |||||| ||| |||||||||||||||||||| |||||||||||
Sbjct: 319 ggtgcctc---------ctttagctggaagcattgacattggagttccctcatcgcaacc 369
Query: 132 ggttttgcctgagtttacttccccgagtttctcttttggtgattctatggagctcatggc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggttttgcctgagtttacttccccgagtttctcttttggtgattctatggagctcatggc 429
Query: 192 tgtccccaaaaagaagatttctaagtctagaagaggaattagaaatggaccaaaagcttt 251
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 430 tgtccccaaaaggaagatttctaagtctagaagaggaataagaaatggaccaaaagcttt 489
Query: 252 gaaacctattcatgtgcttgtcctgtgcaagggttgtggtcgtgtccggcttccacacta 311
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaaacctattcctgtgcttgtcctgtgcaagggttgtggtcgtgtccggcttccacacta 549
Query: 312 ctactgctgtagtgggaaaccaaaccacgatcatactggtgagcagaatggtcgaaactg 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctactgctgtagtgggaaaccaaaccacgatcatactggtgagcagaatggtcgaaactg 609
Query: 372 a 372
|
Sbjct: 610 a 610
>gnl|LJGI|GO025513
Length = 412
Score = 121 bits (61), Expect = 3e-27
Identities = 102/117 (87%), Gaps = 9/117 (7%)
Strand = Plus / Plus
Query: 12 attcgcgattctcaggggcaatgggaggaaccttttagggttcaataggttgtttcattc 71
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 305 attcgcgattctcaggggcaatgggaggagccttttagggttcaataggttgtttcattc 364
Query: 72 cgtgcctcaagctcctcctttagttgggagcattgacattggagttccgtcatcgca 128
|| |||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct: 365 ggt---------acctcctttagctggaagcattgacattggagttccctcatcgca 412