Miyakogusa Predicted Gene

Lj4g3v0320540.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0320540.1 tr|H2KHX9|H2KHX9_9INFA Polymerase PA OS=Influenza
A virus (A/HaNoi/Q099/2007(H3N2)) GN=PA PE=3 SV=1,43.18,3.8,
,TC70450.path1.1
         (234 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70450 homologue to UniRef100_Q2Z1Y7 Cluster: Pm27 pro...   464   e-130

>gnl|LJGI|TC70450 homologue to UniRef100_Q2Z1Y7 Cluster: Pm27 protein; n=1; Prunus
           mume|Rep: Pm27 protein - Prunus mume (Japanese flowering
           apricot), partial (7%)
          Length = 640

 Score =  464 bits (234), Expect = e-130
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggttagcagacactgccaatctgcaattttccaatcctcggaaccattcatggcaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atggttagcagacactgccaatctgcaattttccaatcctcggaaccattcatggcaatc 510

                                                                       
Query: 61  attcttgccaaagacttcataaaatcaaatgtttacataatgtgcaaatgcaataggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 attcttgccaaagacttcataaaatcaaatgtttacataatgtgcaaatgcaataggagg 450

                                                                       
Query: 121 aaggtaggaatgtactgtacaagtaaaacaaattacaacaagataagaattgaaaatgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaggtaggaatgtactgtacaagtaaaacaaattacaacaagataagaattgaaaatgcc 390

                                                                 
Query: 181 catcttttgatttttcctgtttctggacaagaaaaacccttccaatgttattaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catcttttgatttttcctgtttctggacaagaaaaacccttccaatgttattaa 336