Miyakogusa Predicted Gene

Lj4g3v0281190.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0281190.3 Non Chatacterized Hit- tr|O82065|O82065_SOLTU
Putative outward rectifying potassium channel StKCO1a
,26.88,0.04,seg,NULL; Voltage-gated potassium channels,NULL; PROBABLE
CALCIUM-ACTIVATED OUTWARD-RECTIFYING POTAS,CUFF.46792.3
         (615 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AU089098 similar to UniRef100_A7Q100 Cluster: Chromosom...    56   3e-07

>gnl|LJGI|AU089098 similar to UniRef100_A7Q100 Cluster: Chromosome chr7 scaffold_42,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_42, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (28%)
          Length = 385

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 131/160 (81%), Gaps = 4/160 (2%)
 Strand = Plus / Plus

                                                                       
Query: 100 aaagggaggatgaggattaggatgaaggttggattggcattaggggttgtggtgctttgt 159
           ||||||||||||||||| ||| |||||||||| |||||| | || || |||||  | |||
Sbjct: 39  aaagggaggatgaggatcaggttgaaggttggtttggcacttggtgtggtggttttgtgt 98

                                                                       
Query: 160 attgggctt-ggtgttggggttatgcattttgtggaaaggcttgga-tgggtagattctt 217
           |||||| || ||||||  |||  || ||||||||| | || ||||| ||||| |||||| 
Sbjct: 99  attgggattgggtgtt-tggtgctgtattttgtgg-agggtttggattgggttgattcta 156

                                                   
Query: 218 tttatctttcagttatgtctgttactactgttggctatgg 257
           ||||| | || || |||||||||||||| ||||| |||||
Sbjct: 157 tttatttgtctgtcatgtctgttactacggttgggtatgg 196