Miyakogusa Predicted Gene
- Lj4g3v0280790.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0280790.1 tr|E4MW07|E4MW07_THEHA mRNA, clone: RTFL01-07-E01
OS=Thellungiella halophila PE=2 SV=1,48.08,2e-19,HMG_BOX_2,High
mobility group, superfamily; seg,NULL; high mobility group,High
mobility group, super,CUFF.46764.1
(477 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73673 similar to UniRef100_A7QQN2 Cluster: Chromosome... 922 0.0
gnl|LJGI|GO023548 similar to UniRef100_A7QQN2 Cluster: Chromosom... 846 0.0
>gnl|LJGI|TC73673 similar to UniRef100_A7QQN2 Cluster: Chromosome undetermined
scaffold_143, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_143,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (52%)
Length = 470
Score = 922 bits (465), Expect = 0.0
Identities = 465/465 (100%)
Strand = Plus / Plus
Query: 1 atggtgcaaacggctaaaggctcgtcgtcgtcgcagaacaacgtttctcactccgcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 atggtgcaaacggctaaaggctcgtcgtcgtcgcagaacaacgtttctcactccgcttct 65
Query: 61 ccggccaccgtctccgcctcctcccgcaaactagtgttgagggttaaatcaagtgagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ccggccaccgtctccgcctcctcccgcaaactagtgttgagggttaaatcaagtgagcaa 125
Query: 121 atgaagagatcggcgcaacagactaagtcaacaaagaaacccaaagcaaagcaaaagacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atgaagagatcggcgcaacagactaagtcaacaaagaaacccaaagcaaagcaaaagacg 185
Query: 181 agcaaacaaaggattgacgctaacaagccaaagaagccccccactgccttcttctacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 agcaaacaaaggattgacgctaacaagccaaagaagccccccactgccttcttctacttc 245
Query: 241 ttggaggattttcgtaaagaatttcaagtgcagaatccagatgtaaagacaatgcgtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttggaggattttcgtaaagaatttcaagtgcagaatccagatgtaaagacaatgcgtgat 305
Query: 301 attggcaagtcatgtggagagaagtggaaaacaatgacttatgaggagaaggttcaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 attggcaagtcatgtggagagaagtggaaaacaatgacttatgaggagaaggttcaatac 365
Query: 361 tatgacatagcaacagaaaaacgtgcagaatttgatagagcaatgacagaatataacaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tatgacatagcaacagaaaaacgtgcagaatttgatagagcaatgacagaatataacaag 425
Query: 421 aaaatggaaagcggtgaatttgaagatactgatgaggagttagag 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaaatggaaagcggtgaatttgaagatactgatgaggagttagag 470
>gnl|LJGI|GO023548 similar to UniRef100_A7QQN2 Cluster: Chromosome undetermined
scaffold_143, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_143,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (52%)
Length = 757
Score = 846 bits (427), Expect = 0.0
Identities = 427/427 (100%)
Strand = Plus / Plus
Query: 1 atggtgcaaacggctaaaggctcgtcgtcgtcgcagaacaacgtttctcactccgcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 atggtgcaaacggctaaaggctcgtcgtcgtcgcagaacaacgtttctcactccgcttct 98
Query: 61 ccggccaccgtctccgcctcctcccgcaaactagtgttgagggttaaatcaagtgagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ccggccaccgtctccgcctcctcccgcaaactagtgttgagggttaaatcaagtgagcaa 158
Query: 121 atgaagagatcggcgcaacagactaagtcaacaaagaaacccaaagcaaagcaaaagacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 atgaagagatcggcgcaacagactaagtcaacaaagaaacccaaagcaaagcaaaagacg 218
Query: 181 agcaaacaaaggattgacgctaacaagccaaagaagccccccactgccttcttctacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 agcaaacaaaggattgacgctaacaagccaaagaagccccccactgccttcttctacttc 278
Query: 241 ttggaggattttcgtaaagaatttcaagtgcagaatccagatgtaaagacaatgcgtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttggaggattttcgtaaagaatttcaagtgcagaatccagatgtaaagacaatgcgtgat 338
Query: 301 attggcaagtcatgtggagagaagtggaaaacaatgacttatgaggagaaggttcaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 attggcaagtcatgtggagagaagtggaaaacaatgacttatgaggagaaggttcaatac 398
Query: 361 tatgacatagcaacagaaaaacgtgcagaatttgatagagcaatgacagaatataacaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tatgacatagcaacagaaaaacgtgcagaatttgatagagcaatgacagaatataacaag 458
Query: 421 aaaatgg 427
|||||||
Sbjct: 459 aaaatgg 465
Score = 103 bits (52), Expect = 1e-21
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 426 ggaaagcggtgaatttgaagatactgatgaggagttagagttttatgagtaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggaaagcggtgaatttgaagatactgatgaggagttagagttttatgagtaa 609