Miyakogusa Predicted Gene

Lj4g3v0210990.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0210990.1 Non Chatacterized Hit- tr|I1LXT6|I1LXT6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,53.33,0.018,seg,NULL,NODE_30899_length_2143_cov_94.451233.path2.1
         (805 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC69464 homologue to emb|X17062.1|SINARRNA S.alba 18S a...   844   0.0  
gnl|LJGI|TC72599                                                      741   0.0  
gnl|LJGI|TC78019 gb|AF071069.1|AF071069 Trifolium repens 18S rib...    76   4e-13

>gnl|LJGI|TC69464 homologue to emb|X17062.1|SINARRNA S.alba 18S and 25S rRNA genes,
           partial (4%)
          Length = 1018

 Score =  844 bits (426), Expect = 0.0
 Identities = 447/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcaaaagcatggagccagccagcaaaaacaacccaaacacaagtcatacaccctcacg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 454 atgcaaaagcatggagccagccagcaaaaacaacccaaacacaactcatacaccctcacg 395

                                                                       
Query: 61  tacagtagacccaacaccactaaacgttccacaccccgcaatgccaaggcaagcgagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tacagtagacccaacaccactaaacgttccacaccccgcaatgccaaggcaagcgagcaa 335

                                                                       
Query: 121 atagaagcatcgagcagcgccatgtctacatcgctaggtatgatgaaacctggaaatgta 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atggaagcatcgagcagcgccatgtctacatcgctaggtatgatgaaacctggaaatgta 275

                                                                       
Query: 181 cccaccgcatgtaccgatcgggactcgttatttgagggacaagaaaaatcgctttcacaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 274 cccaccgcatgtaccgatcgggactcgttatttgagggacaagaaaaatcgcttgcacaa 215

                                                                       
Query: 241 tcaacattttcttcaaaagagattttatttcaagagaaatcgttttcacaatcattttct 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 214 tcaacattttcttcaaaagagattttatttcaagagaaatcgctttcacaatcattttct 155

                                                                       
Query: 301 ttgaaaaggttttcttcgaaaaagtcggatcattttttagaaacattttcacaatcattt 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ttgaaagggttttcttcgaaaaagtcggatcattttttagaaacattttcacaatcattt 95

                                                                       
Query: 361 tccatatggcaaaaactcacgtttagatcaaaaatcgcgtccaaactagatcacacgacc 420
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 94  tacatatggcaaaaactcacgttcagatcaaaaatcgcgtccaaactagatcacacgacc 35

                                             
Query: 421 cgccgggacatgcaacacgaatttcggttcgtgc 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  cgccgggacatgcaacacgaatttcggttcgtgc 1


>gnl|LJGI|TC72599 
          Length = 545

 Score =  741 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 424 cgggacatgcaacacgaatttcggttcgtgctgcggcatcacgaattgacccctgacgct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgggacatgcaacacgaatttcggttcgtgctgcggcatcacgaattgacccctgacgct 486

                                                                       
Query: 484 agcgccgtcaccggaatccccacgccaatgagattgtggtcggcattcggcacgtcaaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agcgccgtcaccggaatccccacgccaatgagattgtggtcggcattcggcacgtcaaga 426

                                                                       
Query: 544 gtgaaatcaatcagccacatcacattccaaacagttgggacaacacaaaaatcaagctcc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgaaatcaatcagccacatcacattccaaacagttgggacaacacaaaaatcaagctcc 366

                                                                       
Query: 604 gaaaatgaggatcgacgaatgcccgaccgacgggttgaagctcacgaatttgagctcgaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaaaatgaggatcgacgaatgcccgaccgacgggttgaagctcacgaatttgagctcgaa 306

                                                                       
Query: 664 catgccggagtcaagcaaaagcttcaccaaaccttaagaacgcaatgtttgtgtgccaca 723
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 catgccggagtcaagcaaaagcttcaccaaaccttaagaacgcaatgtttgtgtgccaca 246

                                                                       
Query: 724 actgggtgtgataagtcacaaatcgtaactgggttgtcgtttacccattttgaaaaatct 783
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 245 actgggtgtgataagtcacaaaccgtgactgggttgtcgtttacccattttgaaaaatct 186

                                 
Query: 784 cggtcgggacgcaatttttgat 805
           ||||||||||||||||||||||
Sbjct: 185 cggtcgggacgcaatttttgat 164


>gnl|LJGI|TC78019 gb|AF071069.1|AF071069 Trifolium repens 18S ribosomal RNA gene,
          partial sequence, partial (83%)
          Length = 1935

 Score = 75.8 bits (38), Expect = 4e-13
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                
Query: 1  atgcaaaagcatggagccagccagcaaaaacaacccaa 38
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 72 atgcaaaagcatggagccagccagcaaaaacaacccaa 35