Miyakogusa Predicted Gene

Lj4g3v0149440.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0149440.1 Non Chatacterized Hit- tr|K4BC02|K4BC02_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,23.88,1e-18,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PPR,Pentatricopeptide repeat; no
desc,CUFF.46517.1
         (1332 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AU089102 weakly similar to UniRef100_A7QJL0 Cluster: Ch...   807   0.0  

>gnl|LJGI|AU089102 weakly similar to UniRef100_A7QJL0 Cluster: Chromosome chr8
            scaffold_106, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr8 scaffold_106, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (23%)
          Length = 480

 Score =  807 bits (407), Expect = 0.0
 Identities = 448/465 (96%)
 Strand = Plus / Plus

                                                                        
Query: 726  gcaagaattaggtttccaagctaatgatgtcacctatgttgaacttctcacagcttgtag 785
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16   gcaagaattaggtttccaagctaatgatgtcacctatgttgaacttctcacagcttgtag 75

                                                                        
Query: 786  tcatgctggattagttgatgaggggattcaatactttgataagcttctcaagaacagatc 845
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76   tcatgctggattagttgatgaggggattcaatactttgataagcttctcaagaacagatc 135

                                                                        
Query: 846  tatacaagtcaaagaagatcattatgcatgtctggttgatctttgtggtcgtgcaggaag 905
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136  tatacaagtcaaagaanatcattatgcatgtctggttgatctttgtggtcgtgcaggaag 195

                                                                        
Query: 906  attgaaagaagctttctatataattgaggggctcggggtaaagttatcattgtctgtttg 965
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196  attgaaagaanctttctatataattgaggggctcggggtaaagttatcattgtctgtttg 255

                                                                        
Query: 966  gggaccactccttgctggatgtaatgtgcacggaaatgctgatattgggaagcttgtagc 1025
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 256  gggaccactccttgctggatgtaatgtgcacggaaatgctgatattgggaagcttgtaac 315

                                                                        
Query: 1026 taagaaaattttgaaagttgaacacgaaaatgcaggtacttattcattactctctaatat 1085
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316  tacgaaaattttgaaagttgaacacgaaaatgcaggtacttattcattactctctaatat 375

                                                                        
Query: 1086 gtatgcttcagtagggaagtggaaagaagctgccaatgttaggatgaaaatgaaggacaa 1145
            |||||||||| || ||| ||||||| || |||||  ||||  |||||||||||| |||||
Sbjct: 376  gtatgcttcantacggangtggaaanaanctgcccctgttnngatgaaaatgaacgacaa 435

                                                         
Query: 1146 ggggttaaagaaacaaccaggttgtagttggattgaagttggtaa 1190
            ||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct: 436  ggggttaaagaaacaaccacgttgtngttggattgaagtnggtaa 480