Miyakogusa Predicted Gene
- Lj4g3v0120030.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0120030.1 tr|G7JLM2|G7JLM2_MEDTR F-box family protein
OS=Medicago truncatula GN=MTR_4g133170 PE=4 SV=1,65.84,0,A Receptor
for Ubiquitination Targets,F-box domain, cyclin-like; F-box
domain,F-box domain, cyclin-l,CUFF.46466.1
(1209 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69774 similar to UniRef100_A4PU41 Cluster: Cyclin-lik... 1380 0.0
gnl|LJGI|TC65700 similar to UniRef100_Q2HVF5 Cluster: Cyclin-lik... 460 e-128
gnl|LJGI|TC74346 weakly similar to UniRef100_A4PU41 Cluster: Cyc... 141 1e-32
gnl|LJGI|AV414925 weakly similar to UniRef100_Q2HVF5 Cluster: Cy... 123 3e-27
>gnl|LJGI|TC69774 similar to UniRef100_A4PU41 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (17%)
Length = 854
Score = 1380 bits (696), Expect = 0.0
Identities = 696/696 (100%)
Strand = Plus / Plus
Query: 1 atggcggaccatcttccgtcggaagtaatcaccgacatactctgccgtgttccggcgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 atggcggaccatcttccgtcggaagtaatcaccgacatactctgccgtgttccggcgaac 218
Query: 61 tccctcctccgcttccgctccatttccaagtggtggcgctcactcatcgacagcacccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tccctcctccgcttccgctccatttccaagtggtggcgctcactcatcgacagcacccac 278
Query: 121 ttcatcttcctccacctccacaaaaccacctactccttcctcatcctccgccagcactcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttcatcttcctccacctccacaaaaccacctactccttcctcatcctccgccagcactcc 338
Query: 181 catctctaccgcatcgacctcgattcccctaaccaagccgtcgaaatcgaccacccgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 catctctaccgcatcgacctcgattcccctaaccaagccgtcgaaatcgaccacccgctc 398
Query: 241 atgtgctacagcaaccgcatcaagatcctcggttcctgcaacggcctcctctgcatctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgtgctacagcaaccgcatcaagatcctcggttcctgcaacggcctcctctgcatctgc 458
Query: 301 aacatcgccgatgacatcgcgttgtggaaccctactcttcgaaagcaccggattctcccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aacatcgccgatgacatcgcgttgtggaaccctactcttcgaaagcaccggattctcccc 518
Query: 361 tctgagcccctcaaccggaacaaaaccccggaggaaaacatcaacaacaacaccaccttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tctgagcccctcaaccggaacaaaaccccggaggaaaacatcaacaacaacaccaccttc 578
Query: 421 tgcgccgcccatgtccacggattcggatacgattccttctccggcgactacaaactggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgcgccgcccatgtccacggattcggatacgattccttctccggcgactacaaactggta 638
Query: 481 agcatttcctactttgttgaccttcagcggggcaccttcgattccaaggtcaagctcttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 agcatttcctactttgttgaccttcagcggggcaccttcgattccaaggtcaagctcttc 698
Query: 541 agcctccgaatggactcgtggaagagcctcccgagcttgccctacgctctctgctgcgcg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agcctccgaatggactcgtggaagagcctcccgagcttgccctacgctctctgctgcgcg 758
Query: 601 aggaccatgggcgttttcgtcggtggcgcgttacactgggttgtgacccggaaactcgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aggaccatgggcgttttcgtcggtggcgcgttacactgggttgtgacccggaaactcgaa 818
Query: 661 ccggatcagcccgatttggtggttgcgtttgacctg 696
||||||||||||||||||||||||||||||||||||
Sbjct: 819 ccggatcagcccgatttggtggttgcgtttgacctg 854
>gnl|LJGI|TC65700 similar to UniRef100_Q2HVF5 Cluster: Cyclin-like F-box; F-box protein
interaction domain; Galactose oxidase, central; n=1;
Medicago truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain; Galactose oxidase, central - Medicago
truncatula (Barrel medic), partial (5%)
Length = 855
Score = 460 bits (232), Expect = e-128
Identities = 232/232 (100%)
Strand = Plus / Minus
Query: 978 tagcaagctttgttggtatgacctgaaaaatggagatgtgagttgtgctagaatatcagg 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tagcaagctttgttggtatgacctgaaaaatggagatgtgagttgtgctagaatatcagg 796
Query: 1038 attgcctagcctcattgaaggcatcgtttgtgtggggagccttgtcccaccaaagttact 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 attgcctagcctcattgaaggcatcgtttgtgtggggagccttgtcccaccaaagttact 736
Query: 1098 gagtccgacgagtgacgatagccgcagtgagctgcatagattgggacatggaagtactag 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gagtccgacgagtgacgatagccgcagtgagctgcatagattgggacatggaagtactag 676
Query: 1158 gaagagaagagatgacttcctgtccaaaggattcaaactaactttgtaaaca 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gaagagaagagatgacttcctgtccaaaggattcaaactaactttgtaaaca 624
>gnl|LJGI|TC74346 weakly similar to UniRef100_A4PU41 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (31%)
Length = 589
Score = 141 bits (71), Expect = 1e-32
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 230 accacccgctcatgtgctacagcaaccgcatcaagatcctcggttcctgcaacggcctcc 289
||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct: 398 accaccccctcatgtgctacagcaaccgcatcaacatcctcggctcctgccacggcctcc 457
Query: 290 tctgcatctgcaacatcgccgatgacatcgcgttgtggaaccc 332
|||||||||||||| ||||||| |||||||| || ||||||||
Sbjct: 458 tctgcatctgcaacgtcgccgacgacatcgccttctggaaccc 500
Score = 75.8 bits (38), Expect = 6e-13
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 32 ccgacatactctgccgtgttccggcgaactccctcctccgcttccgctccatttccaagt 91
||||||| |||| |||| |||||| || |||||||||||| ||||| || || |||||||
Sbjct: 182 ccgacatcctctcccgtcttccggtgacctccctcctccgattccggtcaatctccaagt 241
Query: 92 ggtggcgctcactcatcgacagcacccacttcat 125
|||||||| ||||||||||||| ||||||||
Sbjct: 242 catggcgctccctcatcgacagcaaacacttcat 275
>gnl|LJGI|AV414925 weakly similar to UniRef100_Q2HVF5 Cluster: Cyclin-like F-box;
F-box protein interaction domain; Galactose oxidase,
central; n=1; Medicago truncatula|Rep: Cyclin-like
F-box; F-box protein interaction domain; Galactose
oxidase, central - Medicago truncatula (Barrel medic),
partial (10%)
Length = 414
Score = 123 bits (62), Expect = 3e-27
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 230 accacccgctcatgtgctacagcaaccgcatcaagatcctcggttcctgcaacggcctcc 289
||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct: 332 accaccccctcatgtgctacagcaaccgcatcaacatcctcggctcctgccacggcctcc 391
Query: 290 tctgcatctgcaacatcgccga 311
|||||||||||||| |||||||
Sbjct: 392 tctgcatctgcaacgtcgccga 413
Score = 75.8 bits (38), Expect = 6e-13
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 32 ccgacatactctgccgtgttccggcgaactccctcctccgcttccgctccatttccaagt 91
||||||| |||| |||| |||||| || |||||||||||| ||||| || || |||||||
Sbjct: 116 ccgacatcctctcccgtcttccggtgacctccctcctccgattccggtcaatctccaagt 175
Query: 92 ggtggcgctcactcatcgacagcacccacttcat 125
|||||||| ||||||||||||| ||||||||
Sbjct: 176 catggcgctccctcatcgacagcaaacacttcat 209