Miyakogusa Predicted Gene
- Lj4g3v0094910.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0094910.3 Non Chatacterized Hit- tr|E0VZ46|E0VZ46_PEDHC
snRNA-activating protein complex subunit, putative
OS=,26.4,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,snRNA-activating protein complex, subunit 3; seg,NULL;
zf,CUFF.46395.3
(1089 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS354614 similar to UniRef100_A7R3V7 Cluster: Chromosom... 1172 0.0
gnl|LJGI|FS328266 weakly similar to UniRef100_Q9S7F0 Cluster: F1... 515 e-145
>gnl|LJGI|FS354614 similar to UniRef100_A7R3V7 Cluster: Chromosome undetermined
scaffold_574, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_574, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(54%)
Length = 717
Score = 1172 bits (591), Expect = 0.0
Identities = 605/612 (98%)
Strand = Plus / Minus
Query: 478 tcaacggaccaggtgatgcaaaaagcagggcagcatgatccttctggnnnnnnnctcatt 537
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 717 tcaacggaccaggtgatgcaaaaagcagggcagcatgatccttctggtttttttctcatt 658
Query: 538 gaggatatattttacactgatttgagggatccatctgctattgatttaactagacctata 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaggatatattttacactgatttgagggatccatctgctattgatttaactagacctata 598
Query: 598 ctagattgggtccaaaactccaacgaggaggcgcaaaagaaatgggaatatattataacc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctagattgggtccaaaactccaacgaggaggcgcaaaagaaatgggaatatattataacc 538
Query: 658 ggggaactaaagcagaaacaaaaagcaatcatgggcacagtatctacaccacgcatgcct 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggggaactaaagcagaaacaaaaagcaatcatgggcacagtatctacaccacgcatgcct 478
Query: 718 catttcagttccattgagatgcacaagatacgtttttgtgacttaagctttcgacttggt 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 catttcagttccattgagatgcacaagatacgtttttgtgacttaagctttcgacttggt 418
Query: 778 gctggatacctgtattgtcatcagggtgaatgcagccataccttagtggtacgagatatg 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gctggatacctgtattgtcatcagggtgaatgcagccataccttagtggtacgagatatg 358
Query: 838 aggttaatgcatcctgatgatgtgaacaatcgggctgtttatccaagagtcacttttcaa 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aggttaatgcatcctgatgatgtgaacaatcgggctgtttatccaagagtcacttttcaa 298
Query: 898 ctaaaactgcgttttcagaaatgtagggtttgcaagatattcagagctacaaaggtcaca 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctaaaactgcgttttcagaaatgtagggtttgcaagatattcagagctacaaaggtcaca 238
Query: 958 gttgatgacagatggacatcagaaaacccttgttatttttgtgatgactgttttgcccta 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gttgatgacagatggacatcagaaaacccttgttatttttgtgatgactgttttgcccta 178
Query: 1018 cttcacttagcagaggatggctctccattgtatactgagtacttagagtatgattatcac 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cttcacttagcagaggatggctctccattgtatactgagtacttagagtatgattatcac 118
Query: 1078 catgattaattg 1089
||||||||||||
Sbjct: 117 catgattaattg 106
>gnl|LJGI|FS328266 weakly similar to UniRef100_Q9S7F0 Cluster: F1K23.20; n=1;
Arabidopsis thaliana|Rep: F1K23.20 - Arabidopsis
thaliana (Mouse-ear cress), partial (8%)
Length = 841
Score = 515 bits (260), Expect = e-145
Identities = 300/320 (93%)
Strand = Plus / Plus
Query: 1 atggatatggctttcaaacaagtatttgagggtagggagaacaacgaaaatcatccacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atggatatggctttcaaacaagtatttgagggtagggagaacaacgaaaatcatccacca 497
Query: 61 cttttgaaccaccccaatacagggtgtcatgtgaagaactccaggnnnnnnnnnnnnnnn 120
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttttgaaccaccccaatacagggtgtcatgtgaagaactccaggaaaaagaaaagggga 557
Query: 121 nnnnntaatgccattcttgatagtgattgtctggacaaggtggagcaaattgtgacaatc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaaaataatgccattcttgatagtgattgtctggacaaggtggagcaaattgtgacaatc 617
Query: 181 aaacgaaaccaggaagaagacatggcagcagctagacttcattcatttaatcctgtttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaacgaaaccaggaagaagacatggcagcagctagacttcattcatttaatcctgtttgc 677
Query: 241 aggaccaatgaatcttcgggcaaatcattacgtactgaaaggatgatggctctaaggtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aggaccaatgaatcttcgggcaaatcattacgtactgaaaggatgatggctctaaggtct 737
Query: 301 acaagttctaccagaaaggt 320
||||||||||||||||||||
Sbjct: 738 acaagttctaccagaaaggt 757
Score = 87.7 bits (44), Expect = 1e-16
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 319 gtcaactctgggggccttcacgaacacacacctgtgcaataccc 362
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gtcaactctgggggccttcacgaacacacacctgtgcaataccc 841