Miyakogusa Predicted Gene
- Lj4g3v0073690.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0073690.1 Non Chatacterized Hit- tr|I1K4D0|I1K4D0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.79,0,DNA
DAMAGE-BINDING PROTEIN 1 (DAMAGE-SPECIFIC DNA-BINDING PROTEIN
1)(UV-DAMAGED DNA-BINDING
FACTOR),,NODE_47381_length_996_cov_13.278112.path1.1
(924 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70978 homologue to UniRef100_A7Q1B3 Cluster: Chromoso... 839 0.0
gnl|LJGI|TC80555 similar to UniRef100_Q9M0V3 Cluster: DNA damage... 682 0.0
gnl|LJGI|TC80183 homologue to UniRef100_A7Q1B3 Cluster: Chromoso... 452 e-126
gnl|LJGI|TC67703 homologue to UniRef100_Q6QNU4 Cluster: DNA dama... 416 e-115
>gnl|LJGI|TC70978 homologue to UniRef100_A7Q1B3 Cluster: Chromosome chr10
scaffold_43, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr10 scaffold_43, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (23%)
Length = 975
Score = 839 bits (423), Expect = 0.0
Identities = 676/764 (88%), Gaps = 21/764 (2%)
Strand = Plus / Plus
Query: 9 atggaactacgttgtgactgctcacaaacccaccaaagtcactcattcatgcgtcggcaa 68
|||||||||||| || || ||||||||||||||||| || || ||||| ||||||| ||
Sbjct: 180 atggaactacgtcgtcacagctcacaaacccaccaacgttacccattctggcgtcggtaa 239
Query: 69 tttcactggccctcaagaccgcaatctcatcgtcgccaaatgcacccgtctcgagattca 128
|||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 240 tttcaccggccctcaagacctcaatctcatcgtcgcgaaatgcacccgtatcgagattca 299
Query: 129 tttgctctctcctcaggagggcttgcagttgcagttgcagttgcagcctattttagacgt 188
||||||||||||||||| || ||||| || || ||||| ||
Sbjct: 300 tttgctctctcctcagg-------------------gc--ttgcaacccatgttagatgt 338
Query: 189 ccccatatatggaagaattgccatccttcaactcttccgccctcatggtgaagcacagga 248
||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 339 gcccatttatggaagaattgccacccttgaactcttccgccctcatggtgaagcacagga 398
Query: 249 atgtctgtttgttgtgactgaaaaatacaaattctgtgttcttcaatgggatcgtgagac 308
| ||||||||||| |||| | |||||| |||||||||||||||||||||| ||||||
Sbjct: 399 ttatctgtttgttgcgactaagcgatacaagttctgtgttcttcaatgggatcctgagac 458
Query: 309 tcatcaacttgttacaagggctatgggggatgtttatgatcgtataggacggcccacaga 368
| | |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 459 ttctgaacttgttacaagggctatgggggatgtgtctgatcgtataggacgacccacaga 518
Query: 369 taatggtcagattggcattgtcgatcctgattgtaggttgattggactccgtttgtatga 428
|||||| || ||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 519 taatggacaaattggcattatcgatcctgattgtaggttgattggactccatttgtatga 578
Query: 429 tggcttgtttaaagttattccttttgaccataacggacaactcaaggaagcgtttaatat 488
||||||||||||||||||||| || || |||| ||||||||||||||||||||||||||
Sbjct: 579 tggcttgtttaaagttattcccttcgataataaaggacaactcaaggaagcgtttaatat 638
Query: 489 taagcttcaggagctcgatgttttggatattaaatttctttatggttgttcaaaaccaac 548
|| |||| |||||||| | |||||||||||||||||||| | |||||||||||| |||||
Sbjct: 639 taggcttgaggagctccaagttttggatattaaatttctctttggttgttcaaagccaac 698
Query: 549 tattgtggttctttaccaggacaacaaaaatgctcgtcatgtgaaaacgtatgaggttga 608
| |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct: 699 ttttgtggttctttaccaggacaacagagatgctcgtcatgtgaagacgtatgaggttgc 758
Query: 609 tctgcaggacaaaaattttgttgggggtccatggtcccagaacaaccttgataatggggc 668
|||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 759 tctgaaggataaagattttgttgagggtccatggtcccagaacaaccttgataatggggc 818
Query: 669 taatttattgataccagttcccccacctctttgtggtgtgcttattattggtgaagaaac 728
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 819 tgatttattgataccagttccccctcctctttgtggtgtgcttattattggtgaagaaac 878
Query: 729 catagtatactgtagtgctactgctttcaaagctatcccaatca 772
|||||||| ||||||||| | ||||||||||||||| |||||||
Sbjct: 879 catagtattctgtagtgccaatgctttcaaagctattccaatca 922
>gnl|LJGI|TC80555 similar to UniRef100_Q9M0V3 Cluster: DNA damage-binding protein 1a;
n=2; Arabidopsis thaliana|Rep: DNA damage-binding
protein 1a - Arabidopsis thaliana (Mouse-ear cress),
partial (10%)
Length = 467
Score = 682 bits (344), Expect = 0.0
Identities = 368/372 (98%), Gaps = 3/372 (0%)
Strand = Plus / Plus
Query: 1 atgagtgaatggaactacgttgtgactgctcacaaacccaccaaagtcactcattcatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 atgagtgaatggaactacgttgtgactgctcacaaacccaccaaagtcactcattcatgc 155
Query: 61 gtcggcaatttcactgg-ccctcaagaccgcaatctcatcgtcgccaaatgcacccg-tc 118
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 156 gtcggcaatgtcactggtccctcaagaccgcaatctcatcgtcgccaaatgcacccgatc 215
Query: 119 tcgag-attcatttgctctctcctcaggagggcttgcagttgcagttgcagttgcagcct 177
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tcgagtattcatttgctctctcctcaggagggcttgcagttgcagttgcagttgcagcct 275
Query: 178 attttagacgtccccatatatggaagaattgccatccttcaactcttccgccctcatggt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attttagacgtccccatatatggaagaattgccatccttcaactcttccgccctcatggt 335
Query: 238 gaagcacaggaatgtctgtttgttgtgactgaaaaatacaaattctgtgttcttcaatgg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaagcacaggaatgtctgtttgttgtgactgaaaaatacaaattctgtgttcttcaatgg 395
Query: 298 gatcgtgagactcatcaacttgttacaagggctatgggggatgtttatgatcgtatagga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gatcgtgagactcatcaacttgttacaagggctatgggggatgtttatgatcgtatagga 455
Query: 358 cggcccacagat 369
||||||||||||
Sbjct: 456 cggcccacagat 467
>gnl|LJGI|TC80183 homologue to UniRef100_A7Q1B3 Cluster: Chromosome chr10
scaffold_43, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr10 scaffold_43, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 1026
Score = 452 bits (228), Expect = e-126
Identities = 326/359 (90%), Gaps = 6/359 (1%)
Strand = Plus / Plus
Query: 566 aggacaacaaaaatgctcgtcatgtgaaaacgtatgaggttgatctgcaggacaaaaatt 625
||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||| |||
Sbjct: 480 aggacaacaaagatgctcgtcatgtgaaaacgtatgaggttgctctgaaggataaagatt 539
Query: 626 ttgttgggggtccatggtcccagaacaaccttgataatggggctaatttattgataccag 685
|||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 540 ttgttgagggcccatggtcccagaataaccttgataatggggctgatttattgataccag 599
Query: 686 ttcccccacctctttgtggtgtgcttattattggtgaagaaaccatagtatactgtagtg 745
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttccctctcctctttgtggtgtgcttattattggtgaagaaaccatagtatactgtagtg 659
Query: 746 ctactgctttcaaagctatcccaatcaaactcggaccttcacttacaaaagcatatggaa 805
| | ||||||||||||||| ||||||| |||||||| ||||||||||||| ||||
Sbjct: 660 ccaatgctttcaaagctattccaatca------gaccttcaattacaaaagcatacggaa 713
Query: 806 gagttgattctgatggttctagatatttacttggtgatctcacaggagcgcttaatcttc 865
|||||||| |||||||||||||||||||||||||||| | || || ||||| ||| |
Sbjct: 714 gagttgatcctgatggttctagatatttacttggtgaccatactgggttgcttagtctgc 773
Query: 866 ttgtattaacccatgagaaagaaaaggttacaggactgaaaattgagccccttggggag 924
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ttgtaataacccatgagaaagaaaaggttacaggactgaaaattgagccccttggggag 832
>gnl|LJGI|TC67703 homologue to UniRef100_Q6QNU4 Cluster: DNA damage-binding protein
1; n=1; Solanum lycopersicum|Rep: DNA damage-binding
protein 1 - Solanum lycopersicum (Tomato) (Lycopersicon
esculentum), partial (13%)
Length = 578
Score = 416 bits (210), Expect = e-115
Identities = 373/431 (86%), Gaps = 21/431 (4%)
Strand = Plus / Plus
Query: 9 atggaactacgttgtgactgctcacaaacccaccaaagtcactcattcatgcgtcggcaa 68
|||||||||||| || || ||||||||||||||||| || || ||||| |||||||||||
Sbjct: 169 atggaactacgtcgtcacagctcacaaacccaccaacgttacccattcttgcgtcggcaa 228
Query: 69 tttcactggccctcaagaccgcaatctcatcgtcgccaaatgcacccgtctcgagattca 128
|||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 229 tttcaccggccctcaagacctcaatctcatcgtcgcgaaatgcacccgtatcgagattca 288
Query: 129 tttgctctctcctcaggagggcttgcagttgcagttgcagttgcagcctattttagacgt 188
||||||||||||||||| || |||||||| || ||||| ||
Sbjct: 289 tttgctctctcctcagg-------------------gc--ttgcagcccatgttagatgt 327
Query: 189 ccccatatatggaagaattgccatccttcaactcttccgccctcatggtgaagcacagga 248
||||| |||||||||||||||| ||| ||||||| ||||||||||||||| |||||||
Sbjct: 328 gcccatttatggaagaattgccacgcttgaactctttcgccctcatggtgaaacacagga 387
Query: 249 atgtctgtttgttgtgactgaaaaatacaaattctgtgttcttcaatgggatcgtgagac 308
| ||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||
Sbjct: 388 ttatctgtttgttgcgactgaaagatacaagttctgtgttcttcaatgggatcccgagac 447
Query: 309 tcatcaacttgttacaagggctatgggggatgtttatgatcgtataggacggcccacaga 368
| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 448 ttctgaacttgttacaagggctatgggggatgtttctgaccgtataggacggcccacaga 507
Query: 369 taatggtcagattggcattgtcgatcctgattgtaggttgattggactccgtttgtatga 428
|||||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 508 taatggacagattggcattatcgatcctgattgtaggttgattgcactccatttgtatga 567
Query: 429 tggcttgttta 439
|||||||||||
Sbjct: 568 tggcttgttta 578