Miyakogusa Predicted Gene
- Lj4g3v0001110.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0001110.1 Non Chatacterized Hit- tr|B9SPD4|B9SPD4_RICCO
Short-chain dehydrogenase, putative OS=Ricinus communi,77.35,0,no
description,NAD(P)-binding domain; GDHRDH,Glucose/ribitol
dehydrogenase; SDRFAMILY,Short-chain de,CUFF.46346.1
(714 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO026226 similar to UniRef100_A7QCC5 Cluster: Chromosom... 611 e-174
gnl|LJGI|TC71087 similar to UniRef100_A7QCC5 Cluster: Chromosome... 184 5e-46
gnl|LJGI|AV778375 94 1e-18
>gnl|LJGI|GO026226 similar to UniRef100_A7QCC5 Cluster: Chromosome undetermined
scaffold_77, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_77, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (34%)
Length = 319
Score = 611 bits (308), Expect = e-174
Identities = 318/320 (99%), Gaps = 1/320 (0%)
Strand = Plus / Plus
Query: 315 atgggaagttccggtggcggagtttgattcggtgatggataccaatgtcaaagggactgc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgggaagttccggtggcggagtttgattcggtgatggataccaatgtcaaagggactgc 60
Query: 375 caatgtgttgcgacactttatccctctcatgcttgcaaacaagcaaggtgtcattgtcaa 434
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 caatgtgttgcgacactttatccctctcatgcctgcaaacaagcaaggtgtcattgtcaa 120
Query: 435 catgtcttctggatggggaaggtctggtgcagcactggttgctccttactgtgcatcaaa 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catgtcttctggatggggaaggtctggtgcagcactggttgctccttactgtgcatcaaa 180
Query: 495 atgggcgattgaaggattgaccagatcggtcgcaaaagagttgccggaaggaatggcaat 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgggcgattgaaggattgaccagatcggtcgcaaaagagttgccggaaggaatggcaat 240
Query: 555 tgtggctcttaatccaggtgtcatcaacactgatatgcttgcttcctgttttggtgcttc 614
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtggctcttaatcca-gtgtcatcaacactgatatgcttgcttcctgttttggtgcttc 299
Query: 615 tgctgcacactatcaatcac 634
||||||||||||||||||||
Sbjct: 300 tgctgcacactatcaatcac 319
>gnl|LJGI|TC71087 similar to UniRef100_A7QCC5 Cluster: Chromosome undetermined
scaffold_77, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_77, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (12%)
Length = 590
Score = 184 bits (93), Expect = 5e-46
Identities = 147/163 (90%), Gaps = 4/163 (2%)
Strand = Plus / Plus
Query: 283 ggtgcaggaaccataaacaagaacaacaatctatgggaagttccggtggcggagtttgat 342
|||||| |||| |||||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct: 163 ggtgcatgaacaataaacaagaacaacaatttatgggaagttccggtggaggattttgat 222
Query: 343 tcggtgatggataccaatgtcaaagggactgccaatgtgttgcgacactttatccctctc 402
|||||||| |||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct: 223 tcggtgatagataccaatgtcaaag---ctaccaatgtgttgcgacactttat-cctctc 278
Query: 403 atgcttgcaaacaagcaaggtgtcattgtcaacatgtcttctg 445
||||| | |||| |||||||||||| ||||||||||||||||
Sbjct: 279 atgctcgtgaacaggcaaggtgtcatggtcaacatgtcttctg 321
>gnl|LJGI|AV778375
Length = 416
Score = 93.7 bits (47), Expect = 1e-18
Identities = 104/121 (85%), Gaps = 4/121 (3%)
Strand = Plus / Minus
Query: 325 ccggtggcggagtttgattcggtgatggataccaatgtcaaagggactgccaatgtgttg 384
||||||| ||| |||||||||||||| ||||||||| || ||| || ||||||| |||
Sbjct: 416 ccggtggaggattttgattcggtgatagataccaatctccaag---ctaccaatgtcttg 360
Query: 385 cgacactttatccctctcatgcttgcaaacaagcaaggtgtcattgtcaacatgtcttct 444
||||||||||||| | ||||||| | |||| |||||||||||| |||||||||||||||
Sbjct: 359 cgacactttatcctt-tcatgctcgtgaacaggcaaggtgtcatggtcaacatgtcttct 301
Query: 445 g 445
|
Sbjct: 300 g 300