Miyakogusa Predicted Gene
- Lj4g3v0000060.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0000060.1 tr|B9N789|B9N789_POPTR Cl-channel clc-7
OS=Populus trichocarpa GN=POPTRDRAFT_811492 PE=4 SV=1,80.78,0,CHLORIDE
CHANNEL CLC, PLANT,NULL; CHLORIDE CHANNEL,NULL; Clc chloride
channel,Chloride channel, core,gene.g51397.t1.1
(2292 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72370 similar to UniRef100_A7QR06 Cluster: Chromosome... 78 3e-13
gnl|LJGI|GO005971 similar to UniRef100_P93567 Cluster: Chloride ... 66 1e-09
>gnl|LJGI|TC72370 similar to UniRef100_A7QR06 Cluster: Chromosome undetermined
scaffold_147, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_147, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(31%)
Length = 1146
Score = 77.8 bits (39), Expect = 3e-13
Identities = 159/199 (79%)
Strand = Plus / Plus
Query: 2066 tggaaatgtatgttgatctccatcccattactaacaggtcaccatatacagttgttgaaa 2125
|||| |||||||||||||||||||| |||||||| || ||| | || || ||||| |
Sbjct: 522 tggatatgtatgttgatctccatccaattactaattcatccccacacactgtagttgaga 581
Query: 2126 caatgtctctagctaaagctgctcttcttttccgcgaccttgccctcaggcacttgttag 2185
||||||| ||||| |||||||| || |||||||| | | | ||||||||| ||| |
Sbjct: 582 caatgtcactagccaaagctgccattattttccgccaacaaggactcaggcacatgtgtg 641
Query: 2186 tggttccaaagacaccaggaaggcctccgattgtggggatcctaacaaggcacgatttca 2245
| | |||||||| | ||| || ||||| |||| ||||| |||||| | || |||||||
Sbjct: 642 ttgctccaaagagccaagggagacctccagttgttgggattctaacacgccatgatttca 701
Query: 2246 tgcctgagcatgttttggg 2264
|||||||||||||||||||
Sbjct: 702 tgcctgagcatgttttggg 720
Score = 58.0 bits (29), Expect = 3e-07
Identities = 122/153 (79%)
Strand = Plus / Plus
Query: 1646 ctgtggctgattgttttaacaaaggtgtttatgatcagattgtggaaatgaaggggttgc 1705
||||||||||||| || ||||| || || || ||||| ||| || | || || ||| | |
Sbjct: 102 ctgtggctgattgcttcaacaagggcgtctacgatcaaattctgaagatcaaagggcttc 161
Query: 1706 cttatatggaagcacatgcagaaccatatctgaggcaactagttgcaagtgatgttgttt 1765
||||| |||| || ||||||||||| ||| ||||| | | |||||| |||||||||| |
Sbjct: 162 cttatttggaggctcatgcagaaccttatatgaggaatattgttgcacgtgatgttgtct 221
Query: 1766 caggtcccttgtttacattttctgggattgaaa 1798
| ||||| ||| | || |||||||| |||||||
Sbjct: 222 cgggtccattgatgaccttttctggcattgaaa 254
Score = 56.0 bits (28), Expect = 1e-06
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1545 caccatgagaatgactgtttcactttgtgtcatacttcttgaacttactaat 1596
||||||||||||||| || ||||||||||| ||||| ||||| || ||||||
Sbjct: 1 caccatgagaatgacagtctcactttgtgttatactacttgagctcactaat 52
>gnl|LJGI|GO005971 similar to UniRef100_P93567 Cluster: Chloride channel Stclc1; n=1;
Solanum tuberosum|Rep: Chloride channel Stclc1 - Solanum
tuberosum (Potato), partial (5%)
Length = 563
Score = 65.9 bits (33), Expect = 1e-09
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 803 ggtggaggagtgctcttctttggcgaacatttttcactacagctgtggt 851
|||||||||||||||| |||||| | ||||||||||||||||| |||||
Sbjct: 336 ggtggaggagtgctctactttggaggacatttttcactacagcagtggt 384