Miyakogusa Predicted Gene

Lj3g3v3725520.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3725520.1 Non Chatacterized Hit- tr|I1HU49|I1HU49_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,43.97,3e-19,SUBFAMILY NOT NAMED,NULL; DNA-DIRECTED RNA POLYMERASE
III,RNA polymerase III Rpc4; RNA_pol_Rpc4,RNA ,CUFF.46233.1
         (348 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP036471                                                     188   2e-47
gnl|LJGI|GO023386 similar to UniRef100_A7QUY2 Cluster: Chromosom...    54   6e-07
gnl|LJGI|TC59586 similar to UniRef100_A7PDY9 Cluster: Chromosome...    52   2e-06

>gnl|LJGI|BP036471 
          Length = 515

 Score =  188 bits (95), Expect = 2e-47
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  gagcttcctgctcctctgcctttgggaaagaaatcagtgagtctgaaggggaaggagaaa 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagcttcctgctcctctgcctttgggaaagaaatcagtgagtctgaaggggaaggagaaa 480

                                              
Query: 73  gctacatcaactacagcaacaggacagcccccaaa 107
           |||||||||||||||||||||||||||||||||||
Sbjct: 481 gctacatcaactacagcaacaggacagcccccaaa 515


>gnl|LJGI|GO023386 similar to UniRef100_A7QUY2 Cluster: Chromosome chr16 scaffold_182,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_182, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (12%)
          Length = 763

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 13  gagcttcctgctcctctgcctttggga 39
           |||||||||||||||||||||||||||
Sbjct: 737 gagcttcctgctcctctgcctttggga 763


>gnl|LJGI|TC59586 similar to UniRef100_A7PDY9 Cluster: Chromosome chr11 scaffold_13,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_13, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (19%)
          Length = 768

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 13  gagcttcctgctcctctgcctttggg 38
           ||||||||||||||||||||||||||
Sbjct: 743 gagcttcctgctcctctgcctttggg 768