Miyakogusa Predicted Gene
- Lj3g3v3711280.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3711280.1 tr|D7M4Y3|D7M4Y3_ARALL A_IG002N01.11 protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_49045,46.1,9e-18,no
description,BTB/POZ fold; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.46366.1
(756 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC599778 weakly similar to UniRef100_A9S1Y2 Cluster: Pr... 1094 0.0
gnl|LJGI|FS326466 similar to UniRef100_O82343 Cluster: Expressed... 159 3e-38
gnl|LJGI|TC59597 similar to UniRef100_O82343 Cluster: Expressed ... 103 2e-21
gnl|LJGI|TC59295 similar to UniRef100_A7PZQ8 Cluster: Chromosome... 94 2e-18
gnl|LJGI|TC78370 similar to UniRef100_O82343 Cluster: Expressed ... 88 9e-17
gnl|LJGI|TC73952 similar to UniRef100_O82343 Cluster: Expressed ... 72 6e-12
gnl|LJGI|TC62135 similar to UniRef100_O82343 Cluster: Expressed ... 60 2e-08
gnl|LJGI|FS332142 similar to UniRef100_O82343 Cluster: Expressed... 58 8e-08
gnl|LJGI|TC65663 similar to UniRef100_A7PZQ8 Cluster: Chromosome... 54 1e-06
>gnl|LJGI|DC599778 weakly similar to UniRef100_A9S1Y2 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(12%)
Length = 575
Score = 1094 bits (552), Expect = 0.0
Identities = 552/552 (100%)
Strand = Plus / Plus
Query: 1 atggagtctgaccggccccgcggtggcgaatccgttttcaatgtcagcgataagtttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 atggagtctgaccggccccgcggtggcgaatccgttttcaatgtcagcgataagtttctc 71
Query: 61 cggatcgagatcatggcggacaccgccaccaccttctctatcgctggctgcagcaagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cggatcgagatcatggcggacaccgccaccaccttctctatcgctggctgcagcaagagg 131
Query: 121 agacccaaagaacaagttatgaacgtgtattgctctgcagcagcatctactacagttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 agacccaaagaacaagttatgaacgtgtattgctctgcagcagcatctactacagttgtt 191
Query: 181 agagttcaaacactgcgtatcagttcttctatcctcgctgctaaaaccccttcattctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agagttcaaacactgcgtatcagttcttctatcctcgctgctaaaaccccttcattctct 251
Query: 241 aagcttttcgattcaaagcagagacactacaccctcaggattaatgcatctgaagaagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aagcttttcgattcaaagcagagacactacaccctcaggattaatgcatctgaagaagct 311
Query: 301 gttctcatggagctactaaaatttatgtgcagtgatatcttggaaattgatgagcttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gttctcatggagctactaaaatttatgtgcagtgatatcttggaaattgatgagcttttg 371
Query: 361 actgctgatcaatttgaagtctttggacgcatgagacaatgttgccagagattgcaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 actgctgatcaatttgaagtctttggacgcatgagacaatgttgccagagattgcaaaat 431
Query: 421 tcccccatgacacttgactctgcattattttacctcgagcttcctcatactgtccgaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tcccccatgacacttgactctgcattattttacctcgagcttcctcatactgtccgaatg 491
Query: 481 gcggatgcaatccaaccactcactattgctgcaaacaaatatcttgctgcccattacaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gcggatgcaatccaaccactcactattgctgcaaacaaatatcttgctgcccattacaag 551
Query: 541 gatataaccagg 552
||||||||||||
Sbjct: 552 gatataaccagg 563
>gnl|LJGI|FS326466 similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (16%)
Length = 691
Score = 159 bits (80), Expect = 3e-38
Identities = 122/136 (89%)
Strand = Plus / Plus
Query: 417 aaattcccccatgacacttgactctgcattattttacctcgagcttcctcatactgtccg 476
|||||| ||| |||||| |||||| |||||||||||||||||||| ||||||||||||
Sbjct: 366 aaattcgcccttgacacctgactcggcattattttacctcgagctacctcatactgtctt 425
Query: 477 aatggcggatgcaatccaaccactcactattgctgcaaacaaatatcttgctgcccatta 536
|||||| ||||||||||| || ||||||||||||||||| || || ||||||||||| ||
Sbjct: 426 aatggccgatgcaatccagcccctcactattgctgcaaagaagtaccttgctgcccagta 485
Query: 537 caaggatataaccagg 552
||||||||||||||||
Sbjct: 486 caaggatataaccagg 501
>gnl|LJGI|TC59597 similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (23%)
Length = 792
Score = 103 bits (52), Expect = 2e-21
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 257 agcagagacactacaccctcaggattaatgcatctgaagaagctgttctcatggagctac 316
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 383 agcagagacagatcaccctcaggattaatgcatctgaagaagctggtctcatggagctac 442
Query: 317 taaaatttatgt 328
| ||||||||||
Sbjct: 443 tcaaatttatgt 454
Score = 60.0 bits (30), Expect = 2e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 428 tgacacttgactctgcattattttacctcgagcttcctcatactgt 473
|||||||||||||||||||| | ||||| ||||||||| |||||||
Sbjct: 564 tgacacttgactctgcattactctacctggagcttccttatactgt 609
>gnl|LJGI|TC59295 similar to UniRef100_A7PZQ8 Cluster: Chromosome chr15 scaffold_40,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_40, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (47%)
Length = 1623
Score = 93.7 bits (47), Expect = 2e-18
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 270 caccctcaggattaatgcatctgaagaagctgttctcatggagctactaaaatttatgtg 329
|||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||
Sbjct: 381 caccctcaggattaatgcatctgaagaagctgttctcatgaagctattgagatttatgtg 440
Query: 330 cag 332
|||
Sbjct: 441 cag 443
>gnl|LJGI|TC78370 similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (43%)
Length = 1014
Score = 87.7 bits (44), Expect = 9e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 257 agcagagacactacaccctcaggattaatgcatctgaagaagctgttctcatggagctac 316
|||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||
Sbjct: 360 agcagagacatatcaccctcagtattaatgcatctgaagaaactggtctcatggagctac 419
Query: 317 taaaatttatgt 328
| ||||||||||
Sbjct: 420 tcaaatttatgt 431
Score = 67.9 bits (34), Expect = 9e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 412 ttgcaaaattcccccatgacacttgactctgcattattttacctcgagcttcctcatact 471
|||| |||||| ||||||||| ||||||||||||| | ||||| |||||||||||||||
Sbjct: 524 ttgctaaattcgcccatgacaactgactctgcattactctacctggagcttcctcatact 583
Query: 472 gt 473
||
Sbjct: 584 gt 585
>gnl|LJGI|TC73952 similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (19%)
Length = 816
Score = 71.9 bits (36), Expect = 6e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 254 caaagcagagacactacaccctcaggattaatgcatctgaagaagctgttctcatggagc 313
||||||||||||| | ||||| ||||| ||||||||||||||| || |||||||||||
Sbjct: 497 caaagcagagacatatctccctccggatttatgcatctgaagaagatggtctcatggagc 556
Query: 314 tactaaaatttatgtgcagt 333
|||| |||||| ||| ||||
Sbjct: 557 tactgaaatttttgtacagt 576
Score = 52.0 bits (26), Expect = 5e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 170 ctacagttgttagagttcaaacactgcgtatcagttct 207
||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 398 ctacagttgttcgagttgaaacactgcatatcagttct 435
>gnl|LJGI|TC62135 similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (27%)
Length = 809
Score = 60.0 bits (30), Expect = 2e-08
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 253 tcaaagcagagacactacaccctcaggattaatgcatctgaagaagctgttctcatggag 312
|||||| ||||||| |||||||||||||||||| |||||||||| || ||| |||||
Sbjct: 586 tcaaaggagagacatgtcaccctcaggattaatgcttctgaagaagatgctctaatggac 645
Query: 313 ctactaaaatttatgtgcagtgatatcttg 342
|| || || ||||||| |||| ||| ||||
Sbjct: 646 ctgctgaattttatgtacagtaataccttg 675
>gnl|LJGI|FS332142 similar to UniRef100_O82343 Cluster: Expressed protein; n=1;
Arabidopsis thaliana|Rep: Expressed protein -
Arabidopsis thaliana (Mouse-ear cress), partial (22%)
Length = 784
Score = 58.0 bits (29), Expect = 8e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 292 gaagaagctgttctcatggagctactaaaatttatgt 328
|||||||||| ||||||||||||||| ||||||||||
Sbjct: 567 gaagaagctggtctcatggagctactcaaatttatgt 603
Score = 52.0 bits (26), Expect = 5e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 424 cccatgacacttgactctgcattattttacctcgagcttcctcatactgt 473
|||||||||| ||||||||||| | | ||||| || ||||||||||||||
Sbjct: 708 cccatgacacctgactctgcatcactctacctggaacttcctcatactgt 757
>gnl|LJGI|TC65663 similar to UniRef100_A7PZQ8 Cluster: Chromosome chr15 scaffold_40,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_40, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (59%)
Length = 1196
Score = 54.0 bits (27), Expect = 1e-06
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 270 caccctcaggattaatgcatctgaagaagctgttctcatggagctactaaaatttatgt 328
|||||| || |||| ||||||||| ||||||| |||||||||||| || || |||||||
Sbjct: 659 caccctgagaattactgcatctgaggaagctgctctcatggagcttctgaactttatgt 717