Miyakogusa Predicted Gene
- Lj3g3v3652410.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3652410.2 Non Chatacterized Hit- tr|K4A8Z1|K4A8Z1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si035347,54.55,2e-16,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; zf-CCCH,Zinc finger, CCCH-type;
no,CUFF.46246.2
(1350 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64681 similar to UniRef100_A7Q1Y9 Cluster: Chromosome... 1580 0.0
gnl|LJGI|TC81652 similar to UniRef100_Q6T284 Cluster: Predicted ... 587 e-167
gnl|LJGI|AV407125 similar to UniRef100_Q6T284 Cluster: Predicted... 345 4e-94
gnl|LJGI|TC68046 similar to UniRef100_A7Q1Y9 Cluster: Chromosome... 242 5e-63
gnl|LJGI|TC58169 similar to UniRef100_A7Q1Y9 Cluster: Chromosome... 192 4e-48
gnl|LJGI|FS326493 similar to UniRef100_A7Q1Y9 Cluster: Chromosom... 184 1e-45
gnl|LJGI|TC68691 homologue to UniRef100_Q0I6L2 Cluster: Ribonucl... 74 3e-12
gnl|LJGI|TC75155 similar to UniRef100_A4BMW8 Cluster: Permease Y... 62 1e-08
>gnl|LJGI|TC64681 similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13 scaffold_45,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 984
Score = 1580 bits (797), Expect = 0.0
Identities = 800/801 (99%)
Strand = Plus / Plus
Query: 1 atggattcttacgaagctactaggattgtgttttcaaggatccaaaacttggaccctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atggattcttacgaagctactaggattgtgttttcaaggatccaaaacttggaccctgaa 243
Query: 61 aacgctgccaaaatcatgggggtgcttctgcttcaagaccatggtgagaaggagatgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aacgctgccaaaatcatgggggtgcttctgcttcaagaccatggtgagaaggagatgata 303
Query: 121 agattagcatttggtcctgaagctcttcttcactctgtgattatcaaagccagaaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agattagcatttggtcctgaagctcttcttcactctgtgattatcaaagccagaaaggag 363
Query: 181 ttaggatttccctcgaactctccgccaacaccttcaactcctccatctccttctcctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttaggatttccctcgaactctccgccaacaccttcaactcctccatctccttctcctttc 423
Query: 241 ctttcaaggcaaagtagttccacttcttcttcaaggttcagtgggatcaaccttcctcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctttcaaggcaaagtagttccacttcttcttcaaggttcagtgggatcaaccttcctcca 483
Query: 301 tctctcactatcccaaacccttcttggtcttcttcaatgtcagagcttcataacccagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tctctcactatcccaaacccttcttggtcttcttcaatgtcagagcttcataacccagag 543
Query: 361 gatttgatgagtccatcatcttccttacctttctacccaaatggaagttcagatccagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gatttgatgagtccatcatcttccttacctttctacccaaatggaagttcagatccagta 603
Query: 421 gtggatgattttcagcttcaagaccagctttctttcttgaatgatggttctcctactctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtggatgattttcagcttcaagaccagctttctttcttgaatgatggttctcctactctt 663
Query: 481 gctcacaaaaacaacaatcctgatttgttctactctcactctgacttgtcttcaagtccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gctcacaaaaacaacaatcctgatttgttctactctcactctgacttgtcttcaagtccc 723
Query: 541 acagactctggtctctttccttcctatggctggggagggtctcttcacaggaggagttgt 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 acagactctggtctctttccttcctatggctggggagggtctcttcacaggaggagttgc 783
Query: 601 tctgtcaatgatgcttgtttgggttctgaggacccaaattcagggttggggtggaagcct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tctgtcaatgatgcttgtttgggttctgaggacccaaattcagggttggggtggaagcct 843
Query: 661 tgcctttactttgcaagagggtactgtaaaaatggtactagttgcaggttccttcatgga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tgcctttactttgcaagagggtactgtaaaaatggtactagttgcaggttccttcatgga 903
Query: 721 ggacttggtgatggtgatggtgctgcaattgttgggtctcccagcaagattgagatgatg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggacttggtgatggtgatggtgctgcaattgttgggtctcccagcaagattgagatgatg 963
Query: 781 gaccagtgccatgagctactc 801
|||||||||||||||||||||
Sbjct: 964 gaccagtgccatgagctactc 984
>gnl|LJGI|TC81652 similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1; Populus
tremula x Populus alba|Rep: Predicted protein - Populus
tremula x Populus alba, partial (35%)
Length = 981
Score = 587 bits (296), Expect = e-167
Identities = 620/728 (85%), Gaps = 15/728 (2%)
Strand = Plus / Plus
Query: 571 tggggagggtctcttcacaggaggagttgttctgtcaatgatgcttgtttgggttctgag 630
|||||||| ||| ||||| | |||||||| ||||| |||||||| ||| |||| ||||
Sbjct: 123 tggggaggttctgttcaccgcaggagttgctctgtgaatgatgcatgtatggggtctgta 182
Query: 631 gacccaaattcagggttggggtggaagccttgcctttactttgcaagagggtactgtaaa 690
||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gacacaaattctgggtttggttggaagccttgcctttactttgcaagagggtactgtaaa 242
Query: 691 aatggtactagttgcaggttccttcatggaggacttggtgatggtgatggtgctgcaatt 750
||||| ||||||||||||||||||||||||| ||| ||| |||| ||||||
Sbjct: 243 aatggcactagttgcaggttccttcatggag---------atgctgagggtggtgcaatg 293
Query: 751 gttgggtctcccagcaagattgagatgatggaccagtgccatgagctactcagatctaaa 810
||||||||||| || ||||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 294 gttgggtctcctagtaagattgagatgatggaccagtgccatgaactcctcagatccaaa 353
Query: 811 tctgttcagcaacaaagattggctgctgctacttctcagctcatggcttcttccactttc 870
| |||||| || |||||||||||| ||| ||||||||||||| ||||| |||||
Sbjct: 354 accattcagccaccaagattggctgcagct---tctcagctcatgggatcttctactttt 410
Query: 871 ccttactcatctaagtgcatgaatttgcttttgc---agcagcaacagaatgacactcaa 927
|| || || |||||||||| | | ||| ||| |||||||||| | ||| |||||
Sbjct: 411 ccatattcccacaagtgcatgagtctccttatgctgcagcagcaacaaagtgattctcaa 470
Query: 928 agggcagcagctgcagctcttatgatgagtgaggatttgcacaagtttggaagatccagg 987
|| || |||||||||||| | |||||||||||||| |||||||| ||||||||||||||
Sbjct: 471 agagccgcagctgcagctttgatgatgagtgaggacttgcacaaatttggaagatccaga 530
Query: 988 cttgaaagaaatgatttctctttgaacagtcctgggatggttaacccagcttctagacag 1047
|| ||||||||||| || ||| ||||||||||||| ||||| |||||||||||||| |||
Sbjct: 531 ctcgaaagaaatgagttttctctgaacagtcctggaatggtgaacccagcttctaggcag 590
Query: 1048 atctacttgaccttcccagctgatagcactttcagagaagaagatgtttcgaattacttc 1107
|| |||||||| || ||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 591 atatacttgacttttccagcagatagcactttcagagaggaagatgtttcaaactacttc 650
Query: 1108 agcatttttggacctgttcaagatgtgaggatcccataccagcagaagcgcatgtttggt 1167
||||| | || |||||||||||||| ||||||||||| ||||| || || ||||||||
Sbjct: 651 agcatctacgggcctgttcaagatgttaggatcccatatcagcaaaaacggatgtttgga 710
Query: 1168 tttgttacctttgtttatgctgagactgttaagctcattctatccaaaggaaaccctcat 1227
||||||||||||| |||| | ||||| || ||||||||| |||| ||||||||||| |||
Sbjct: 711 tttgttacctttgcttatccggagacagtgaagctcattttatcaaaaggaaacccgcat 770
Query: 1228 tttgtgtgtgatgctagagtgctagttaagccttacaaggagaagggcaaagtcccagac 1287
||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 771 tttgtttgtgatgctcgagtgcttgttaagccttacaaggagaagggaaaagtcccagac 830
Query: 1288 aggtacag 1295
| ||||||
Sbjct: 831 aagtacag 838
>gnl|LJGI|AV407125 similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1;
Populus tremula x Populus alba|Rep: Predicted protein -
Populus tremula x Populus alba, partial (6%)
Length = 174
Score = 345 bits (174), Expect = 4e-94
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 813 tgttcagcaacaaagattggctgctgctacttctcagctcatggcttcttccactttccc 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttcagcaacaaagattggctgctgctacttctcagctcatggcttcttccactttccc 60
Query: 873 ttactcatctaagtgcatgaatttgcttttgcagcagcaacagaatgacactcaaagggc 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttactcatctaagtgcatgaatttgcttttgcagcagcaacagaatgacactcaaagggc 120
Query: 933 agcagctgcagctcttatgatgagtgaggatttgcacaagtttggaagatccag 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcagctgcagctcttatgatgagtgaggatttgcacaagtttggaagatccag 174
>gnl|LJGI|TC68046 similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13 scaffold_45,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 636
Score = 242 bits (122), Expect = 5e-63
Identities = 129/130 (99%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 1 atggattcttacgaagctactaggattgtgttttcaaggatccaaaacttggaccctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atggattcttacgaagctactaggattgtgttttcaaggatccaaaacttggaccctgaa 567
Query: 61 aacgctgccaaaatcatgggggtgcttctgcttcaagaccatggtgagaaggagatgata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 568 aacgctgccaaaatcatgggggtgcttctgcttcaagaccatggtgagaagg-gatgata 626
Query: 121 agattagcat 130
||||||||||
Sbjct: 627 agattagcat 636
>gnl|LJGI|TC58169 similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13 scaffold_45,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 838
Score = 192 bits (97), Expect = 4e-48
Identities = 205/241 (85%)
Strand = Plus / Plus
Query: 13 gaagctactaggattgtgttttcaaggatccaaaacttggaccctgaaaacgctgccaaa 72
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 378 gaagctacaaggattgtgttttcaaggatccaaaacttggaccctgaaaatgcctccaaa 437
Query: 73 atcatgggggtgcttctgcttcaagaccatggtgagaaggagatgataagattagcattt 132
|||||||| |||||||||||||||||||||||||||| || ||||| || ||||| ||
Sbjct: 438 atcatgggcttgcttctgcttcaagaccatggtgagaaagaaatgattaggctagcactt 497
Query: 133 ggtcctgaagctcttcttcactctgtgattatcaaagccagaaaggagttaggatttccc 192
||||||||| | ||| ||||||| |||||| ||| ||| ||||||||||| || || ||
Sbjct: 498 ggtcctgaatcccttgttcactcagtgattctcacagctagaaaggagttgggtttggcc 557
Query: 193 tcgaactctccgccaacaccttcaactcctccatctccttctcctttcctttcaaggcaa 252
||||||||| | |||| || || |||||||| || || ||||||||||| ||||||
Sbjct: 558 atgaactctccttccacactctctacacctccatcaccatcccctttcctttctaggcaa 617
Query: 253 a 253
|
Sbjct: 618 a 618
>gnl|LJGI|FS326493 similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13 scaffold_45,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 686
Score = 184 bits (93), Expect = 1e-45
Identities = 201/237 (84%)
Strand = Plus / Plus
Query: 17 ctactaggattgtgttttcaaggatccaaaacttggaccctgaaaacgctgccaaaatca 76
|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 214 ctacaaggattgtgttttcaaggatccaaaacttggaccctgaaaatgcctccaaaatca 273
Query: 77 tgggggtgcttctgcttcaagaccatggtgagaaggagatgataagattagcatttggtc 136
|||| |||||||||||||||||||||||||||| || ||||| || ||||| ||||||
Sbjct: 274 tgggcttgcttctgcttcaagaccatggtgagaaagaaatgattaggctagcacttggtc 333
Query: 137 ctgaagctcttcttcactctgtgattatcaaagccagaaaggagttaggatttccctcga 196
||||| | ||| ||||||| |||||| ||| ||| ||||||||||| || || || ||
Sbjct: 334 ctgaatcccttgttcactcagtgattctcacagctagaaaggagttgggtttggccatga 393
Query: 197 actctccgccaacaccttcaactcctccatctccttctcctttcctttcaaggcaaa 253
||||||| | |||| || || |||||||| || || ||||||||||| |||||||
Sbjct: 394 actctccttccacactctctacacctccatcaccatcccctttcctttctaggcaaa 450
>gnl|LJGI|TC68691 homologue to UniRef100_Q0I6L2 Cluster: Ribonuclease H; n=1;
Synechococcus sp. CC9311|Rep: Ribonuclease H -
Synechococcus sp. (strain CC9311), partial (6%)
Length = 1415
Score = 73.8 bits (37), Expect = 3e-12
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 928 agggcagcagctgcagctcttatgatgagtgaggatttgcacaagtttggaagatccagg 987
||||||||||||| |||||| |||| |||| |||||||| ||| ||| |||||| ||||
Sbjct: 1115 agggcagcagctgtagctctgatgaggagtacggatttgctcaaatttagaagatgcagg 1174
Query: 988 cttgaaagaaatgattt 1004
|||||||||| ||||||
Sbjct: 1175 cttgaaagaattgattt 1191
>gnl|LJGI|TC75155 similar to UniRef100_A4BMW8 Cluster: Permease YjgP/YjgQ; n=1;
Nitrococcus mobilis Nb-231|Rep: Permease YjgP/YjgQ -
Nitrococcus mobilis Nb-231, partial (5%)
Length = 1291
Score = 61.9 bits (31), Expect = 1e-08
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 928 agggcagcagctgcagctcttatgatgagtgaggattt-gcacaagtttggaagatccag 986
|||||||||||| |||||| ||||| ||| ||||||| || ||| ||||||||||||||
Sbjct: 939 agggcagcagctatagctctgatgattagtaaggattttgctcaaatttggaagatccag 998
Query: 987 gcttgaa 993
|||||||
Sbjct: 999 gcttgaa 1005