Miyakogusa Predicted Gene
- Lj3g3v3652410.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3652410.1 tr|Q3L9F4|Q3L9F4_RHOE4 Conserved hypothetical
membrane protein OS=Rhodococcus erythropolis (strain
P,33.78,4.7,seg,NULL,CUFF.46246.1
(1293 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV422106 weakly similar to UniRef100_A7Q1Y9 Cluster: Ch... 850 0.0
gnl|LJGI|TC74473 weakly similar to UniRef100_A7Q1Y9 Cluster: Chr... 674 0.0
gnl|LJGI|TC81652 similar to UniRef100_Q6T284 Cluster: Predicted ... 456 e-127
gnl|LJGI|AV407125 similar to UniRef100_Q6T284 Cluster: Predicted... 345 4e-94
gnl|LJGI|TC66913 weakly similar to UniRef100_Q6T284 Cluster: Pre... 248 7e-65
gnl|LJGI|BP064022 similar to UniRef100_Q6T284 Cluster: Predicted... 244 1e-63
gnl|LJGI|TC68114 121 1e-26
gnl|LJGI|DC599304 similar to UniRef100_A5D6U8 Cluster: Iron/zinc... 80 4e-14
gnl|LJGI|TC68691 homologue to UniRef100_Q0I6L2 Cluster: Ribonucl... 74 2e-12
gnl|LJGI|TC75155 similar to UniRef100_A4BMW8 Cluster: Permease Y... 62 9e-09
gnl|LJGI|TC64977 UniRef100_A8U0Z7 Cluster: Electron transport pr... 60 4e-08
gnl|LJGI|TC64681 similar to UniRef100_A7Q1Y9 Cluster: Chromosome... 54 2e-06
>gnl|LJGI|AV422106 weakly similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13
scaffold_45, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_45, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 461
Score = 850 bits (429), Expect = 0.0
Identities = 453/461 (98%)
Strand = Plus / Plus
Query: 705 aatggggctgcaacttcttgacatcaagaagcaacaccaacgtgctttttccactggaag 764
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 aatggggctgcaacttctcgacatcaagaagcaacaccaacgtgctttttcctctggaag 60
Query: 765 tccaattccttccccaacccactctcctaacatgtttaaccaaaatcttgttcttccttc 824
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 61 tccaattccttccccaacccactctcctaatatgttcaaccaaaatcttgttcttccttc 120
Query: 825 atttcacagaagctcagaggcctcagaggagaatggttcaagttctgctcctgctagtac 884
||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 attccaccgaagctcagacgcctcagatgagaatggttcaagttctgctcctgctagtac 180
Query: 885 tgtatgtgcttctgttggtcagcaaatttcagttggcagagaagaagttgttgtcaatgg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtatgtgcttctgttggtcagcaaatttcagttggcagagaagaagttgttgtcaatgg 240
Query: 945 ggagaatggagatagtgaaggcagtagcaagcagagctcaagtcatgaagaatttgattt 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggagaatggagatagtgaaggcagtagcaagcagagctcaagtcatgaagaatttgattt 300
Query: 1005 gcaagaatgtttggagcataatctccctgatagcccttttgcttcccccacaaaagctgg 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcaagaatgtttggagcataatctccctgatagcccttttgcttcccccacaaaagctgg 360
Query: 1065 tggagactttgtggctccattctccaatggacctattgaggccatttgttcagatgcctc 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggagactttgtggctccattctccaatggacctattgaggccatttgttcagatgcctc 420
Query: 1125 agctacatctgccaactctaaatctggtaccagcacattac 1165
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agctacatctgccaactctaaatctggtaccagcacattac 461
>gnl|LJGI|TC74473 weakly similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13
scaffold_45, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_45, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 1279
Score = 674 bits (340), Expect = 0.0
Identities = 492/544 (90%), Gaps = 9/544 (1%)
Strand = Plus / Plus
Query: 750 tttttccactggaagtccaattccttccccaacccactctcctaacatgtttaaccaaaa 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttttccactggaagtccaattccttccccaacccactctcctaacatgtttaaccaaaa 60
Query: 810 tcttgttcttccttcatttcacagaagctcagaggcctcagaggagaatggttcaagttc 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 tcttgttcttccttcatttcacagaagctcagaggcctcagaggagaatggttcatgttc 120
Query: 870 tgctcctgctagtactgtatgtgcttctgttggtcagcaaatttcagttggcagagaaga 929
|||| | ||||||||||| | |||||||| |||||||||| |||| | ||||| |||||
Sbjct: 121 tgcttcagctagtactgtgtctgcttctgctggtcagcaagtttctgctggcaaggaaga 180
Query: 930 agttgttgtcaatggggagaatggagatagtgaaggcagtagcaagcagagctcaagtca 989
||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 181 agtcgttgtcaatgtggagaatggagatagtgaaggcagtggcaagcagagctcaagtca 240
Query: 990 tgaagaatttgatttgcaagaatgtttggagcataatctccctgatagcccttttgcttc 1049
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 241 tgaagactgtgatttgcaagaatgttcggagcataatctccctgatagcccttttgcttc 300
Query: 1050 ccccacaaaagctggtggagactttgtggctccattctccaatggacctattgaggccat 1109
|||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 301 ccccacgaaagctggtgcagactttgtggctccattttccaatggacctaatgaggccat 360
Query: 1110 ttgttcagatgcctcagctacatctgccaactctaaatctggtaccagcacattacttcc 1169
| || |||| |||||| || |||||||| |||||||||||||||||||||
Sbjct: 361 tgattttgatg---------catctggcagctctaaatttggtaccagcacattacttcc 411
Query: 1170 accatcagcatctgctcttgatatggggtcttttaaatcctttaactgccaattaccaag 1229
|||| ||||||||||| | || |||||||||| |||||||| |||||||||||||||||
Sbjct: 412 accagcagcatctgctttggacatggggtcttacaaatccttcaactgccaattaccaag 471
Query: 1230 gttctcttccggccatggaactattgggatgtttgccggcaccggtgggccgattggcat 1289
||||||||| || || |||||||||||||||||||| || || || || |||||||||||
Sbjct: 472 gttctcttctggtcacggaactattgggatgtttgcgggtactggcggaccgattggcat 531
Query: 1290 ttag 1293
||||
Sbjct: 532 ttag 535
>gnl|LJGI|TC81652 similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1;
Populus tremula x Populus alba|Rep: Predicted protein -
Populus tremula x Populus alba, partial (35%)
Length = 981
Score = 456 bits (230), Expect = e-127
Identities = 555/659 (84%), Gaps = 12/659 (1%)
Strand = Plus / Plus
Query: 1 atgatggaccagtgccatgagctactcagatctaaatctgttcagcaacaaagattggct 60
|||||||||||||||||||| || |||||||| ||| | |||||| || ||||||||||
Sbjct: 318 atgatggaccagtgccatgaactcctcagatccaaaaccattcagccaccaagattggct 377
Query: 61 gctgctacttctcagctcatggcttcttccactttcccttactcatctaagtgcatgaat 120
|| ||| ||||||||||||| ||||| ||||| || || || |||||||||| |
Sbjct: 378 gcagct---tctcagctcatgggatcttctacttttccatattcccacaagtgcatgagt 434
Query: 121 ttgcttttgc---agcagcaacagaatgacactcaaagggcagcagctgcagctcttatg 177
| ||| ||| |||||||||| | ||| ||||||| || |||||||||||| | |||
Sbjct: 435 ctccttatgctgcagcagcaacaaagtgattctcaaagagccgcagctgcagctttgatg 494
Query: 178 atgagtgaggatttgcacaagtttggaagatccaggcttgaaagaaatgatttctctttg 237
||||||||||| |||||||| |||||||||||||| || ||||||||||| || ||| ||
Sbjct: 495 atgagtgaggacttgcacaaatttggaagatccagactcgaaagaaatgagttttctctg 554
Query: 238 aacagtcctgggatggttaacccagcttctagacagatctacttgaccttcccagctgat 297
||||||||||| ||||| |||||||||||||| ||||| |||||||| || ||||| |||
Sbjct: 555 aacagtcctggaatggtgaacccagcttctaggcagatatacttgacttttccagcagat 614
Query: 298 agcactttcagagaagaagatgtttcgaattacttcagcatttttggacctgttcaagat 357
|||||||||||||| ||||||||||| || ||||||||||| | || ||||||||||||
Sbjct: 615 agcactttcagagaggaagatgtttcaaactacttcagcatctacgggcctgttcaagat 674
Query: 358 gtgaggatcccataccagcagaagcgcatgtttggttttgttacctttgtttatgctgag 417
|| ||||||||||| ||||| || || |||||||| ||||||||||||| |||| | |||
Sbjct: 675 gttaggatcccatatcagcaaaaacggatgtttggatttgttacctttgcttatccggag 734
Query: 418 actgttaagctcattctatccaaaggaaaccctcattttgtgtgtgatgctagagtgcta 477
|| || ||||||||| |||| ||||||||||| |||||||| ||||||||| |||||||
Sbjct: 735 acagtgaagctcattttatcaaaaggaaacccgcattttgtttgtgatgctcgagtgctt 794
Query: 478 gttaagccttacaaggagaagggcaaagtcccagacagg--aagcaa-cagcaacaggta 534
||||||||||||||||||||||| ||||||||||||| | || || | ||||||| |
Sbjct: 795 gttaagccttacaaggagaagggaaaagtcccagacaagtacagaaagctgcaacagctg 854
Query: 535 gata---gagatttttcaccttgtggtactcctacaggactagatgctagagaacagtat 591
|||| | |||||||| ||||||||||| ||||| ||||| ||||||||||| | | |
Sbjct: 855 gataggggggatttttctccttgtggtacacctactggactggatgctagagacccattt 914
Query: 592 gatcttaaccttggaggtagaatgttctacaatactcaagacatgctgtggaggaggaa 650
||||| | ||||||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 915 gatctccaagttggagggagaatgtgctacaatactcaagacatgctgttgaggaggaa 973
>gnl|LJGI|AV407125 similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1;
Populus tremula x Populus alba|Rep: Predicted protein -
Populus tremula x Populus alba, partial (6%)
Length = 174
Score = 345 bits (174), Expect = 4e-94
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 39 tgttcagcaacaaagattggctgctgctacttctcagctcatggcttcttccactttccc 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttcagcaacaaagattggctgctgctacttctcagctcatggcttcttccactttccc 60
Query: 99 ttactcatctaagtgcatgaatttgcttttgcagcagcaacagaatgacactcaaagggc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttactcatctaagtgcatgaatttgcttttgcagcagcaacagaatgacactcaaagggc 120
Query: 159 agcagctgcagctcttatgatgagtgaggatttgcacaagtttggaagatccag 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcagctgcagctcttatgatgagtgaggatttgcacaagtttggaagatccag 174
>gnl|LJGI|TC66913 weakly similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1;
Populus tremula x Populus alba|Rep: Predicted protein -
Populus tremula x Populus alba, partial (12%)
Length = 1343
Score = 248 bits (125), Expect = 7e-65
Identities = 274/323 (84%), Gaps = 3/323 (0%)
Strand = Plus / Plus
Query: 971 gcaagcagagctcaagtcatgaagaatttgatttgcaagaatgtttggagcataatctcc 1030
||||| ||||||| ||||||||||| ||||||| |||||||| |||||||||| |||||
Sbjct: 1 gcaagaagagctccagtcatgaagatcttgatttacaagaatgcttggagcatattctcc 60
Query: 1031 ctgatagcccttttgcttcccccacaaaagctggtggagactttgtggctccattctcca 1090
|||||||||| |||||||||| |||||||||| |||||||| || || |||||||||
Sbjct: 61 ctgatagcccctttgcttccctcacaaaagctattggagactacatgactgcattctcca 120
Query: 1091 atggacctattgaggccatttgttcagatgcctcagctacatctgccaactctaaatctg 1150
|||||||||||||||||| | |||||||||||||||| ||||||| ||||| |||| |
Sbjct: 121 atggacctattgaggccactgattcagatgcctcagctgcatctgctaactccaaattta 180
Query: 1151 gtaccagcacattacttccaccatcagcatctgctcttgatatggggtcttttaaatcct 1210
| | ||||||| ||| ||| |||||||||||| || ||||| |||| ||||||||
Sbjct: 181 gcaatagcacatcgctt---ccagaagcatctgctctagacatgggatcttataaatcct 237
Query: 1211 ttaactgccaattaccaaggttctcttccggccatggaactattgggatgtttgccggca 1270
|||||||||| | || ||||||||||| ||||||||||| ||||| ||| |||| ||||
Sbjct: 238 ataactgccaagttcccaggttctcttctggccatggaaccattggaatgcttgctggca 297
Query: 1271 ccggtgggccgattggcatttag 1293
||||||| || ||||||||||||
Sbjct: 298 ccggtggaccaattggcatttag 320
>gnl|LJGI|BP064022 similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1; Populus
tremula x Populus alba|Rep: Predicted protein - Populus
tremula x Populus alba, partial (5%)
Length = 417
Score = 244 bits (123), Expect = 1e-63
Identities = 126/127 (99%)
Strand = Plus / Minus
Query: 1167 tccaccatcagcatctgctcttgatatggggtcttttaaatcctttaactgccaattacc 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tccaccatcagcatctgctcttgatatggggtcttttaaatcctttaactgccaattacc 358
Query: 1227 aaggttctcttccggccatggaactattgggatgtttgccggcaccggtgggccgattgg 1286
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aaggttctcttccggccgtggaactattgggatgtttgccggcaccggtgggccgattgg 298
Query: 1287 catttag 1293
|||||||
Sbjct: 297 catttag 291
>gnl|LJGI|TC68114
Length = 951
Score = 121 bits (61), Expect = 1e-26
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1233 ctcttccggccatggaactattgggatgtttgccggcaccggtgggccgattggcattta 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttccggccatggaactattgggatgtttgccggcaccggtgggccgattggcattta 60
Query: 1293 g 1293
|
Sbjct: 61 g 61
>gnl|LJGI|DC599304 similar to UniRef100_A5D6U8 Cluster: Iron/zinc purple acid
phosphatase-like protein precursor; n=1; Danio
rerio|Rep: Iron/zinc, partial (2%)
Length = 189
Score = 79.8 bits (40), Expect = 4e-14
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 688 ctccaaagtaggaggttaatggggctgcaacttcttgacatcaagaagcaacaccaacgt 747
|||| ||||| |||||| ||||| |||| ||||||||||||||| ||||||| || |||
Sbjct: 93 ctcccaagtacgaggttgatgggtctgccacttcttgacatcaaacagcaacagcagcgt 152
Query: 748 gctttttccactggaagtccaattccttcccc 779
|| ||||||| ||||||||| ||||||||||
Sbjct: 153 gcattttccatcggaagtccacttccttcccc 184
>gnl|LJGI|TC68691 homologue to UniRef100_Q0I6L2 Cluster: Ribonuclease H; n=1;
Synechococcus sp. CC9311|Rep: Ribonuclease H -
Synechococcus sp. (strain CC9311), partial (6%)
Length = 1415
Score = 73.8 bits (37), Expect = 2e-12
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 154 agggcagcagctgcagctcttatgatgagtgaggatttgcacaagtttggaagatccagg 213
||||||||||||| |||||| |||| |||| |||||||| ||| ||| |||||| ||||
Sbjct: 1115 agggcagcagctgtagctctgatgaggagtacggatttgctcaaatttagaagatgcagg 1174
Query: 214 cttgaaagaaatgattt 230
|||||||||| ||||||
Sbjct: 1175 cttgaaagaattgattt 1191
>gnl|LJGI|TC75155 similar to UniRef100_A4BMW8 Cluster: Permease YjgP/YjgQ; n=1;
Nitrococcus mobilis Nb-231|Rep: Permease YjgP/YjgQ -
Nitrococcus mobilis Nb-231, partial (5%)
Length = 1291
Score = 61.9 bits (31), Expect = 9e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 154 agggcagcagctgcagctcttatgatgagtgaggattt-gcacaagtttggaagatccag 212
|||||||||||| |||||| ||||| ||| ||||||| || ||| ||||||||||||||
Sbjct: 939 agggcagcagctatagctctgatgattagtaaggattttgctcaaatttggaagatccag 998
Query: 213 gcttgaa 219
|||||||
Sbjct: 999 gcttgaa 1005
>gnl|LJGI|TC64977 UniRef100_A8U0Z7 Cluster: Electron transport protein SCO1/SenC; n=1;
alpha proteobacterium BAL199|Rep: Electron transport
protein SCO1/SenC - alpha proteobacterium BAL199, partial
(5%)
Length = 730
Score = 60.0 bits (30), Expect = 4e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1240 ggccatggaactattgggatgtttgccggcaccggtgggccgattggcatttag 1293
||||||||||| ||||| ||| |||| ||||||||||| || ||||||||||||
Sbjct: 2 ggccatggaaccattggaatgcttgctggcaccggtggaccaattggcatttag 55
>gnl|LJGI|TC64681 similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13 scaffold_45,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 984
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 atgatggaccagtgccatgagctactc 27
|||||||||||||||||||||||||||
Sbjct: 958 atgatggaccagtgccatgagctactc 984