Miyakogusa Predicted Gene

Lj3g3v3639960.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3639960.1 Non Chatacterized Hit- tr|I1LP24|I1LP24_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13503
PE,88.43,0,sigma70-ECF: RNA polymerase sigma factor, sigma-70,RNA
polymerase sigma-70; no description,NULL; no ,CUFF.46126.1
         (1014 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP040921 similar to UniRef100_Q9SLX3 Cluster: Sigma fac...   771   0.0  

>gnl|LJGI|BP040921 similar to UniRef100_Q9SLX3 Cluster: Sigma factor; n=1; Nicotiana
            tabacum|Rep: Sigma factor - Nicotiana tabacum (Common
            tobacco), partial (25%)
          Length = 507

 Score =  771 bits (389), Expect = 0.0
 Identities = 389/389 (100%)
 Strand = Plus / Plus

                                                                        
Query: 626  aaaagaaagtcagaaatgctacagaggctatcagcaaagttttctcgcttgatagggaag 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aaaagaaagtcagaaatgctacagaggctatcagcaaagttttctcgcttgatagggaag 60

                                                                        
Query: 686  cattcccctctctgaatggtcttccaggagatactcatcattgttacattgcagataatc 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   cattcccctctctgaatggtcttccaggagatactcatcattgttacattgcagataatc 120

                                                                        
Query: 746  gactggagaacatcccatggcatggagtagatgagtggacactgaaggatgaagtgaaca 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  gactggagaacatcccatggcatggagtagatgagtggacactgaaggatgaagtgaaca 180

                                                                        
Query: 806  aactcatcaatgtgacccttgtggaacgagagagagaaattattcgtctttattatggat 865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aactcatcaatgtgacccttgtggaacgagagagagaaattattcgtctttattatggat 240

                                                                        
Query: 866  tagataaagaatgtcttacgtgggaagacattagtaaacggataggattgtctagagaaa 925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tagataaagaatgtcttacgtgggaagacattagtaaacggataggattgtctagagaaa 300

                                                                        
Query: 926  gagtaaggcaagttgggcttgttgcattggagaaactaaaacatgccgcaaggaagagag 985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gagtaaggcaagttgggcttgttgcattggagaaactaaaacatgccgcaaggaagagag 360

                                         
Query: 986  agatggaggccatgctattgaaacattga 1014
            |||||||||||||||||||||||||||||
Sbjct: 361  agatggaggccatgctattgaaacattga 389