Miyakogusa Predicted Gene
- Lj3g3v3639590.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3639590.1 tr|B9N112|B9N112_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_827509 PE=4 SV=1,71.54,0,ENTH/VHS
domain,ENTH/VHS; GAT-like domain,NULL; VHS,VHS; GAT,GAT; TARGET OF
MYB1 RELATED (TOM1 - REL,CUFF.46078.1
(1194 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62570 similar to UniRef100_A7P260 Cluster: Chromosome... 230 2e-59
gnl|LJGI|TC59710 similar to UniRef100_A7P260 Cluster: Chromosome... 192 3e-48
gnl|LJGI|BW612064 similar to UniRef100_Q0IVD2 Cluster: Os10g0578... 56 5e-07
gnl|LJGI|BW629670 weakly similar to UniRef100_Q0IVD2 Cluster: Os... 56 5e-07
gnl|LJGI|TC72185 similar to UniRef100_A7P260 Cluster: Chromosome... 56 5e-07
>gnl|LJGI|TC62570 similar to UniRef100_A7P260 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 908
Score = 230 bits (116), Expect = 2e-59
Identities = 263/312 (84%)
Strand = Plus / Plus
Query: 684 aaaggaagcttttgatgttgcaagaaatagcattgagcttctctctactgtgttatcttc 743
||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||
Sbjct: 191 aaaggaagcatttgatgttgccagaaatagcattgagctactttctactgtgttatcatc 250
Query: 744 ttcaaaccagcaaggtgttttgaaggatgatctgaccaccacattagtacaacagtgcca 803
|||| || |||| ||||||| |||||||| ||||||||||| | ||||| ||||| |
Sbjct: 251 ttcaccgcaacaagatgttttgcaggatgatttgaccaccacacttgtacagcagtgtcg 310
Query: 804 tcagtcccaaactactgtccacagaatcattgaaacctctggggataatgaagcactgct 863
|| |||||| |||||||||| | || ||||||| || ||||| ||||||||||| ||
Sbjct: 311 tcgctcccaatctactgtccagcgtattgttgaaacttccggggacaatgaagcactact 370
Query: 864 ttttgaggccttgcatgtgaatgatgagattcagaaggttctttccaaatatgaggagct 923
||||||||||||| |||| |||||||||||||||||||| || ||| || || ||| |
Sbjct: 371 ttttgaggccttgaatgttaatgatgagattcagaaggtcctcgacaagtacgaagaggt 430
Query: 924 gaagaagcatgcaattgttccacttgaacctcaaccagctatgatacctgttgctcttga 983
|||||||| | ||| || ||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 431 gaagaagcctacaactgctccccttcaacctgaaccagctatgatacctgttgccgttga 490
Query: 984 gcctgatgagtc 995
||| ||||||||
Sbjct: 491 gccagatgagtc 502
Score = 133 bits (67), Expect = 3e-30
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 504 tgaagaaacttacaagagtttgaaatcaagggggattcgattccctggtcgtaacaatga 563
||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 2 tgaagaaacttacaaaagtttgaaatcgagggggattcggttccctggtcgtgacaatga 61
Query: 564 aagcttggctcctattttcactcctcc 590
|||||||||||| ||||||||||||||
Sbjct: 62 aagcttggctccgattttcactcctcc 88
>gnl|LJGI|TC59710 similar to UniRef100_A7P260 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (76%)
Length = 1104
Score = 192 bits (97), Expect = 3e-48
Identities = 234/280 (83%)
Strand = Plus / Plus
Query: 684 aaaggaagcttttgatgttgcaagaaatagcattgagcttctctctactgtgttatcttc 743
||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||
Sbjct: 825 aaaggaagcatttgatgttgccagaaatagcattgagctactttctactgtgttatcatc 884
Query: 744 ttcaaaccagcaaggtgttttgaaggatgatctgaccaccacattagtacaacagtgcca 803
|||| || |||| ||||||| |||||||| ||||||||||| | ||||| ||||| |
Sbjct: 885 ttcaccgcaacaagatgttttgcaggatgatttgaccaccacacttgtacagcagtgtcg 944
Query: 804 tcagtcccaaactactgtccacagaatcattgaaacctctggggataatgaagcactgct 863
|| |||||| |||||||||| | || ||||||| || ||||| ||||||||||| ||
Sbjct: 945 tcgctcccaatctactgtccagcgtattgttgaaacttccggggacaatgaagcactact 1004
Query: 864 ttttgaggccttgcatgtgaatgatgagattcagaaggttctttccaaatatgaggagct 923
||||||||||||| |||| |||||||||||||||||||| || ||| || || ||| |
Sbjct: 1005 ttttgaggccttgaatgttaatgatgagattcagaaggtcctcgacaagtacgaagaggt 1064
Query: 924 gaagaagcatgcaattgttccacttgaacctcaaccagct 963
|||||||| | ||| || ||| ||| ||||| ||||||||
Sbjct: 1065 gaagaagcctacaactgntccccttcaacctgaaccagct 1104
Score = 155 bits (78), Expect = 8e-37
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 481 gagcttcgctatctgcctgtttatgaagaaacttacaagagtttgaaatcaagggggatt 540
|||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 613 gagcttcgttatcttcctgtatttgaagaaacttacaagagtttgaaatcgagggggatt 672
Query: 541 cgattccctggtcgtaacaatgaaagcttggctcctattttcactcctcc 590
|| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 673 cggttccctggtcgtgacaatgaaagcttggctccgattttcactcctcc 722
Score = 56.0 bits (28), Expect = 5e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 101 tgagcttcaaggtcaaggagtttttcca 128
||||||||||||||||||||||||||||
Sbjct: 230 tgagcttcaaggtcaaggagtttttcca 257
>gnl|LJGI|BW612064 similar to UniRef100_Q0IVD2 Cluster: Os10g0578000 protein; n=1;
Oryza sativa Japonica Group|Rep: Os10g0578000 protein -
Oryza sativa subsp. japonica (Rice), partial (44%)
Length = 481
Score = 56.0 bits (28), Expect = 5e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 101 tgagcttcaaggtcaaggagtttttcca 128
||||||||||||||||||||||||||||
Sbjct: 225 tgagcttcaaggtcaaggagtttttcca 252
>gnl|LJGI|BW629670 weakly similar to UniRef100_Q0IVD2 Cluster: Os10g0578000 protein;
n=1; Oryza sativa Japonica Group|Rep: Os10g0578000
protein - Oryza sativa subsp. japonica (Rice), partial
(39%)
Length = 511
Score = 56.0 bits (28), Expect = 5e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 101 tgagcttcaaggtcaaggagtttttcca 128
||||||||||||||||||||||||||||
Sbjct: 317 tgagcttcaaggtcaaggagtttttcca 344
>gnl|LJGI|TC72185 similar to UniRef100_A7P260 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (43%)
Length = 713
Score = 56.0 bits (28), Expect = 5e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 101 tgagcttcaaggtcaaggagtttttcca 128
||||||||||||||||||||||||||||
Sbjct: 288 tgagcttcaaggtcaaggagtttttcca 315
Score = 54.0 bits (27), Expect = 2e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 481 gagcttcgctatctgcctgtttatgaagaaacttacaagagtt 523
|||||||| ||||| ||||| | ||||||||||||||||||||
Sbjct: 671 gagcttcgttatcttcctgtatttgaagaaacttacaagagtt 713