Miyakogusa Predicted Gene
- Lj3g3v3639350.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3639350.1 tr|B9MZM2|B9MZM2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_595516 PE=4
SV=1,32.62,7e-18,seg,NULL;
Frigida,Frigida-like,NODE_42918_length_2395_cov_23.117329.path1.1
(1362 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70495 212 4e-54
gnl|LJGI|TC66034 82 1e-14
gnl|LJGI|GO024999 UniRef100_Q3LX78 Cluster: Envelope glycoprotei... 78 2e-13
gnl|LJGI|TC63372 54 2e-06
>gnl|LJGI|TC70495
Length = 537
Score = 212 bits (107), Expect = 4e-54
Identities = 211/245 (86%), Gaps = 3/245 (1%)
Strand = Plus / Plus
Query: 1118 agaacaaacgtcctattgaagcagtgctcaataatcatccattacatcagccgggtctcg 1177
|||| |||||||||||||||||||||| |||| |||||| |||||||||| |||| ||
Sbjct: 24 agaagaaacgtcctattgaagcagtgcccaatgatcatcaattacatcagtggggtatca 83
Query: 1178 acaacaaacgtcctcggacaggtgaaccacgctctctgcctcctcgtgtcttcacttctc 1237
|||||||||||||||||||||||| | ||| ||||||||||| |||||||||||||||
Sbjct: 84 acaacaaacgtcctcggacaggtgcaacacactctctgcctc---gtgtcttcacttctc 140
Query: 1238 attaccaacatagcttttatcctagtggaatgccttcaccacttggactccctccagact 1297
|||||| ||||| ||||| |||||||||||||||| |||| ||||||| || || |||
Sbjct: 141 attacccacataccttttgtcctagtggaatgcctgcaccgtttggacttccccccaact 200
Query: 1298 actatggtgttgctggcggagcaaattatttttgtcaccccagcccttatccccctttta 1357
| ||||||| | ||||||||||| |||| ||||||||||| || ||||| || ||||| |
Sbjct: 201 attatggtgctactggcggagcagattacttttgtcaccctaggccttacccacctttca 260
Query: 1358 gatga 1362
|||||
Sbjct: 261 gatga 265
>gnl|LJGI|TC66034
Length = 677
Score = 81.8 bits (41), Expect = 1e-14
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 466 gttctacagtgcatttcagataacaatctaggatctcaggatctagttaatgagattcaa 525
|||| ||| ||||||||||| |||||||||| |||| |||||||| ||||||||||||||
Sbjct: 245 gttcaacaatgcatttcagacaacaatctagaatctgaggatctaattaatgagattcaa 304
Query: 526 gatcgcatt 534
||||||||
Sbjct: 305 catcgcatt 313
Score = 63.9 bits (32), Expect = 2e-09
Identities = 83/100 (83%)
Strand = Plus / Plus
Query: 231 gacccttggtttttcagataaaatatctgatttggttgagaaccttattatgaagaagcg 290
|||||| ||||| |||| ||| | |||||||| ||| ||| |||||||| |||| ||
Sbjct: 4 gaccctgggtttcacagacaaagtctctgattttgttcagagccttattaagaaggagta 63
Query: 291 gtatgttggtgctgttagattcatttgtgcatataagttg 330
|||| ||| |||||||||||||||||||||| |||||||
Sbjct: 64 gtattttgaagctgttagattcatttgtgcatttaagttg 103
>gnl|LJGI|GO024999 UniRef100_Q3LX78 Cluster: Envelope glycoprotein; n=1; Human
immunodeficiency virus 1|Rep: Envelope glycoprotein -
Human immunodeficiency virus 1, partial (8%)
Length = 687
Score = 77.8 bits (39), Expect = 2e-13
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 466 gttctacagtgcatttcagataacaatctaggatctcaggatctagttaatgagattcaa 525
|||||| ||||||||||||| ||||| |||| |||| ||||||| ||||||||||| ||
Sbjct: 166 gttctagagtgcatttcagacaacaacctagaatctggggatctaattaatgagattgaa 225
Query: 526 gatcgcattct 536
|||||||||||
Sbjct: 226 gatcgcattct 236
>gnl|LJGI|TC63372
Length = 728
Score = 54.0 bits (27), Expect = 2e-06
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 466 gttctacagtgcatttcagataacaatctaggatctcaggatctagttaatgagattcaa 525
||||||| || ||||||||| ||||| ||| |||| || |||| |||||||||||| |
Sbjct: 207 gttctactgtccatttcagacaacaagttagaatctgtgggtctacttaatgagattcga 266
Query: 526 gatcgcattct 536
|||||||||||
Sbjct: 267 gatcgcattct 277