Miyakogusa Predicted Gene
- Lj3g3v3513690.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3513690.1 tr|G7JPH8|G7JPH8_MEDTR Photosystem II
stability/assembly factor HCF136 OS=Medicago truncatula
GN=MTR,87.63,0,seg,NULL; Oligoxyloglucan reducing end-specific
cellobiohydrolase,NULL; SUBFAMILY NOT NAMED,NULL; FA,CUFF.45963.1
(1182 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61733 homologue to UniRef100_A7P2W0 Cluster: Chromoso... 1398 0.0
gnl|LJGI|TC68074 homologue to UniRef100_A7P2W0 Cluster: Chromoso... 880 0.0
gnl|LJGI|TC71261 similar to UniRef100_A5JVZ6 Cluster: Plastid hi... 511 e-144
gnl|LJGI|BP048325 homologue to UniRef100_A5JVZ6 Cluster: Plastid... 139 4e-32
>gnl|LJGI|TC61733 homologue to UniRef100_A7P2W0 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 800
Score = 1398 bits (705), Expect = 0.0
Identities = 705/705 (100%)
Strand = Plus / Plus
Query: 1 atggcgactctgcaattcaccttcactgacccaaccacgttatggaggccatctctccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 atggcgactctgcaattcaccttcactgacccaaccacgttatggaggccatctctccct 155
Query: 61 tcttcttctagaacttcccattctcgcaaccgcaccagcttcgtcgtcaaagcttctttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tcttcttctagaacttcccattctcgcaaccgcaccagcttcgtcgtcaaagcttctttc 215
Query: 121 gacatttccagaaccaggagacagctcctcgccgacaccgcagcattatctctgctactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gacatttccagaaccaggagacagctcctcgccgacaccgcagcattatctctgctactc 275
Query: 181 ccttctctgccggcgaggtccgacgaggcgctcgctgagtgggagagagtttacctccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccttctctgccggcgaggtccgacgaggcgctcgctgagtgggagagagtttacctccct 335
Query: 241 atcgaccctggcgtcgtgcttctcgacattgctttcgtccctgaggatcccaaccatggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atcgaccctggcgtcgtgcttctcgacattgctttcgtccctgaggatcccaaccatggt 395
Query: 301 tttcttctgggtacgaggcaaacccttttggagactaaagatggaggaaacacttggggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttcttctgggtacgaggcaaacccttttggagactaaagatggaggaaacacttggggt 455
Query: 361 ccacgatctataccctctgcagaggatgaagatttcaactacaggtttaattccatcagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccacgatctataccctctgcagaggatgaagatttcaactacaggtttaattccatcagc 515
Query: 421 ttcagagggaaggaagggtggatagtggggaaacctaatattctgctctacacttctgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttcagagggaaggaagggtggatagtggggaaacctaatattctgctctacacttctgat 575
Query: 481 gctggagaaagttggggaaggataccactcagtgctcaacttcctggtgatatggtgtac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gctggagaaagttggggaaggataccactcagtgctcaacttcctggtgatatggtgtac 635
Query: 541 ataaaggcaactggggataagagtgcagagatggtgactgacgaaggtgcaatctatgtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ataaaggcaactggggataagagtgcagagatggtgactgacgaaggtgcaatctatgtt 695
Query: 601 acatcaaatagaggctacaactggaaggctgctgttcaggaaacggtgtcagctactctc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 acatcaaatagaggctacaactggaaggctgctgttcaggaaacggtgtcagctactctc 755
Query: 661 aacagaacagtttctagtggcattagcggtgcaagctattacact 705
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aacagaacagtttctagtggcattagcggtgcaagctattacact 800
>gnl|LJGI|TC68074 homologue to UniRef100_A7P2W0 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (36%)
Length = 762
Score = 880 bits (444), Expect = 0.0
Identities = 444/444 (100%)
Strand = Plus / Plus
Query: 739 ggaaattatgtcgctgtatcaagtcgtggtaacttctacttaacctgggagcctggtcag 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaaattatgtcgctgtatcaagtcgtggtaacttctacttaacctgggagcctggtcag 60
Query: 799 gcatactggcagccacataacagagcagttgccagaagaattcagaacatgggatggaga 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcatactggcagccacataacagagcagttgccagaagaattcagaacatgggatggaga 120
Query: 859 gctgatggtggtctgtggcttcttgttcgcggaggtggtctttatctaagcaaaggcaca 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gctgatggtggtctgtggcttcttgttcgcggaggtggtctttatctaagcaaaggcaca 180
Query: 919 gggataactgaagaatttgaggaggtgcctgttcaaagccggggctttggcattcttgat 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gggataactgaagaatttgaggaggtgcctgttcaaagccggggctttggcattcttgat 240
Query: 979 gtggggtatcgttcaacggacgaggcttgggcagcaggaggaagtggtgttctgttgaga 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtggggtatcgttcaacggacgaggcttgggcagcaggaggaagtggtgttctgttgaga 300
Query: 1039 actaataatggtggcaagtcatgggttcgtgacaaagctgctgacaacattgctgcaaat 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 actaataatggtggcaagtcatgggttcgtgacaaagctgctgacaacattgctgcaaat 360
Query: 1099 ttatactctgtgaagttcattgatgacaagaagggatttgtattggggaatgatggagtc 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttatactctgtgaagttcattgatgacaagaagggatttgtattggggaatgatggagtc 420
Query: 1159 ttgcttcgctaccttggatagagc 1182
||||||||||||||||||||||||
Sbjct: 421 ttgcttcgctaccttggatagagc 444
>gnl|LJGI|TC71261 similar to UniRef100_A5JVZ6 Cluster: Plastid high chlorophyll
fluorescence 136 precursor; n=1; Zea mays|Rep: Plastid
high chlorophyll fluorescence 136 precursor - Zea mays
(Maize), partial (22%)
Length = 730
Score = 511 bits (258), Expect = e-144
Identities = 261/262 (99%)
Strand = Plus / Plus
Query: 921 gataactgaagaatttgaggaggtgcctgttcaaagccggggctttggcattcttgatgt 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gataactgaagaatttgaggaggtgcctgttcaaagccggggctttggcattcttgatgt 247
Query: 981 ggggtatcgttcaacggacgaggcttgggcagcaggaggaagtggtgttctgttgagaac 1040
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtatcgttcaacggacggggcttgggcagcaggaggaagtggtgttctgttgagaac 307
Query: 1041 taataatggtggcaagtcatgggttcgtgacaaagctgctgacaacattgctgcaaattt 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taataatggtggcaagtcatgggttcgtgacaaagctgctgacaacattgctgcaaattt 367
Query: 1101 atactctgtgaagttcattgatgacaagaagggatttgtattggggaatgatggagtctt 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atactctgtgaagttcattgatgacaagaagggatttgtattggggaatgatggagtctt 427
Query: 1161 gcttcgctaccttggatagagc 1182
||||||||||||||||||||||
Sbjct: 428 gcttcgctaccttggatagagc 449
>gnl|LJGI|BP048325 homologue to UniRef100_A5JVZ6 Cluster: Plastid high chlorophyll
fluorescence 136 precursor; n=1; Zea mays|Rep: Plastid
high chlorophyll fluorescence 136 precursor - Zea mays
(Maize), partial (5%)
Length = 401
Score = 139 bits (70), Expect = 4e-32
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 1113 gttcattgatgacaagaagggatttgtattggggaatgatggagtcttgcttcgctacct 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gttcattgatgacaagaagggatttgtattggggaatgatggagtcttgcttcgctacct 284
Query: 1173 tggatagagc 1182
||||||||||
Sbjct: 283 tggatagagc 274