Miyakogusa Predicted Gene
- Lj3g3v3475730.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3475730.1 tr|A9PAI6|A9PAI6_POPTR Auxin influx carrier
component OS=Populus trichocarpa GN=PtrAUX6 PE=2
SV=1,88.41,0,Aa_trans,Amino acid transporter, transmembrane; seg,NULL;
AUX1-LIKE AMINO ACID PERMEASE,NULL; AMINO ,CUFF.45858.1
(1452 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62040 homologue to UniRef100_Q9FEL6 Cluster: Auxin tr... 274 1e-72
gnl|LJGI|TC82501 homologue to UniRef100_Q9FEL8 Cluster: Auxin tr... 176 3e-43
gnl|LJGI|TC60561 homologue to UniRef100_Q9FEL7 Cluster: Auxin tr... 176 3e-43
gnl|LJGI|TC82201 homologue to UniRef100_A3RID2 Cluster: Auxin in... 139 5e-32
gnl|LJGI|TC70960 homologue to UniRef100_Q9FEL6 Cluster: Auxin tr... 125 8e-28
gnl|LJGI|BU494441 homologue to UniRef100_A7PP23 Cluster: Chromos... 105 8e-22
gnl|LJGI|TC67912 homologue to UniRef100_Q9FEL8 Cluster: Auxin tr... 78 2e-13
gnl|LJGI|TC63986 similar to UniRef100_A7PP23 Cluster: Chromosome... 68 2e-10
gnl|LJGI|TC62233 homologue to UniRef100_Q76DT1 Cluster: AUX1-lik... 60 4e-08
>gnl|LJGI|TC62040 homologue to UniRef100_Q9FEL6 Cluster: Auxin transporter-like
protein 3; n=1; Medicago truncatula|Rep: Auxin
transporter-like protein 3 - Medicago truncatula (Barrel
medic), partial (53%)
Length = 847
Score = 274 bits (138), Expect = 1e-72
Identities = 423/518 (81%)
Strand = Plus / Plus
Query: 91 ctatcaaacttcttgtggcatggtggttctgtttatgatgcttggtttagctgtgcttcc 150
|||||||| || || ||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 201 ctatcaaagtttttctggcatggtggctctgtctatgatgcatggtttagctgtgcttct 260
Query: 151 aaccaggtggctcaagtgctgcttacgttgccatactcattttcccaactgggaatgctc 210
|| ||||| || |||||||| || || || ||||| || ||||| |||||||| ||| |
Sbjct: 261 aatcaggttgcacaagtgcttctaacattaccatattccttttcacaactggggatgttg 320
Query: 211 tctgggatactttttcaactcttctatggcttgttgggtagttggacagcttacctcatt 270
|||||||| || |||||||| || ||||| | |||| || ||||| |||||||| ||
Sbjct: 321 tctgggattctgtttcaacttttttatggactcatgggaagctggactgcttaccttatc 380
Query: 271 agtgttctctatgttgaatacagaaccaggaaagagagagaaaaggctaatttcaggaac 330
||||| ||||||||||| ||||||||||| || ||||| ||||| | | |||| || |||
Sbjct: 381 agtgtcctctatgttgagtacagaaccagaaaggagagggaaaaagttgattttagaaac 440
Query: 331 catgtcatccagtggtttgaagttcttgatgggctccttggcaagcactggagaaacgtg 390
||||| || ||||||||||||||||||||||| || | ||||| |||||||| || |
Sbjct: 441 catgttattcagtggtttgaagttcttgatggacttttaggcaaacactggaggaatctt 500
Query: 391 ggtttgggctttaactgcacatttcttctgtttggatctgttatacaactgatagcttgt 450
||| | ||| ||||| || || ||||| |||||||| || || || | || || |||
Sbjct: 501 ggtctcttcttcaactgtactttccttctatttggatcagtaattcagttaattgcctgt 560
Query: 451 gcaagcaacatatattacataaatgacaatctggacaagaggacttggacttacatcttc 510
||||| |||||||| ||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct: 561 gcaagtaacatatactacataaatgacaatttggacaagagaacttggacttacatattt 620
Query: 511 ggagcttgttgtgccaccactgtctttattccttcctttcacaactacagaatctggtcc 570
||||| || |||||||| || || || |||||||| || ||||| ||||||||||||||
Sbjct: 621 ggagcctgctgtgccacaacagtattcattccttctttccacaattacagaatctggtca 680
Query: 571 tttttaggccttatcatgaccacctacactgcttggta 608
|| || || || | |||||||| |||||||| |||||
Sbjct: 681 ttcttgggactcgtgatgaccacttacactgcatggta 718
>gnl|LJGI|TC82501 homologue to UniRef100_Q9FEL8 Cluster: Auxin transporter-like
protein 1; n=1; Medicago truncatula|Rep: Auxin
transporter-like protein 1 - Medicago truncatula (Barrel
medic), partial (36%)
Length = 832
Score = 176 bits (89), Expect = 3e-43
Identities = 332/413 (80%)
Strand = Plus / Plus
Query: 106 tggcatggtggttctgtttatgatgcttggtttagctgtgcttccaaccaggtggctcaa 165
||||||||||| |||||||||||||| ||||| ||||||||||| || ||||| || ||
Sbjct: 420 tggcatggtggctctgtttatgatgcctggttcagctgtgcttcaaatcaggttgcacag 479
Query: 166 gtgctgcttacgttgccatactcattttcccaactgggaatgctctctgggatacttttt 225
|| ||| | || |||||||||| || || ||||| |||||||| || || || ||||
Sbjct: 480 gttctgttaacactgccatactctttctctcaacttggaatgctttcaggaatcattttc 539
Query: 226 caactcttctatggcttgttgggtagttggacagcttacctcattagtgttctctatgtt 285
||| |||||||||||||| | ||||| ||||| ||||| | |||||| |||| ||| ||
Sbjct: 540 caaatcttctatggcttgcttggtagctggactgcttatttgattagtattctgtatatt 599
Query: 286 gaatacagaaccaggaaagagagagaaaaggctaatttcaggaaccatgtcatccagtgg 345
|| ||||||||||| ||||||| ||| || | || |||| ||||||||||| ||||||
Sbjct: 600 gagtacagaaccagaaaagagaaagagaatgttagcttcaaaaaccatgtcattcagtgg 659
Query: 346 tttgaagttcttgatgggctccttggcaagcactggagaaacgtgggtttgggctttaac 405
|||||||| | || || | || || |||||| | | || |||| ||| |||
Sbjct: 660 tttgaagtgttggaaggtttactgggtccatactggaaggccattggattggccttcaac 719
Query: 406 tgcacatttcttctgtttggatctgttatacaactgatagcttgtgcaagcaacatatat 465
||||| ||||| || |||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 720 tgcacttttctcctctttggatctgttatccagcttatagcttgtgcaagtaacatatac 779
Query: 466 tacataaatgacaatctggacaagaggacttggacttacatcttcggagcttg 518
||||||||||| | ||||||||||||||||||||||||| || ||||||||
Sbjct: 780 tacataaatgatcacttggacaagaggacttggacttacatatttggagcttg 832
>gnl|LJGI|TC60561 homologue to UniRef100_Q9FEL7 Cluster: Auxin transporter-like
protein 2; n=1; Medicago truncatula|Rep: Auxin
transporter-like protein 2 - Medicago truncatula (Barrel
medic), partial (41%)
Length = 831
Score = 176 bits (89), Expect = 3e-43
Identities = 407/513 (79%)
Strand = Plus / Plus
Query: 96 aaacttcttgtggcatggtggttctgtttatgatgcttggtttagctgtgcttccaacca 155
||||||| | ||||||||||||||||||| || |||||||| ||||| ||||| || ||
Sbjct: 289 aaacttcctctggcatggtggttctgtttgggacgcttggttcagctgcgcttcaaatca 348
Query: 156 ggtggctcaagtgctgcttacgttgccatactcattttcccaactgggaatgctctctgg 215
||||||||||||||| | || | || || ||||| || |||||||| ||||| || ||
Sbjct: 349 agtggctcaagtgctgttgacacttccgtattcattctctcaactgggcatgctatcagg 408
Query: 216 gatactttttcaactcttctatggcttgttgggtagttggacagcttacctcattagtgt 275
||| | |||| |||||||||| | |||| || ||||| ||||| || || |||||
Sbjct: 409 gatcttgcttcaggtcttctatggaatcatgggaagctggactgcttatctaatcagtgt 468
Query: 276 tctctatgttgaatacagaaccaggaaagagagagaaaaggctaatttcaggaaccatgt 335
|||||||||||||||| | | ||| || || | ||||| | | ||||| |||||||||
Sbjct: 469 tctctatgttgaataccgtagcagaaaggaaaaggaaaacgtcagtttcaagaaccatgt 528
Query: 336 catccagtggtttgaagttcttgatgggctccttggcaagcactggagaaacgtgggttt 395
|| |||||||||||||| ||||||||| | || || | |||| | | || |
Sbjct: 529 tattcagtggtttgaagtgcttgatgggttgctgggtccatattggaaagcagcagggct 588
Query: 396 gggctttaactgcacatttcttctgtttggatctgttatacaactgatagcttgtgcaag 455
| || || || || || || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 589 agctttcaattgtactttcctcctgtttggatctgtgatacagctgatagcgtgtgcaag 648
Query: 456 caacatatattacataaatgacaatctggacaagaggacttggacttacatcttcggagc 515
|||||| || |||||||||||| || |||||||||||||||||||||| ||||| |||||
Sbjct: 649 caacatctactacataaatgaccatttggacaagaggacttggacttatatctttggagc 708
Query: 516 ttgttgtgccaccactgtctttattccttcctttcacaactacagaatctggtccttttt 575
||| ||||| ||| |||| || || ||||| || ||||| |||||||||||||| ||| |
Sbjct: 709 ttgctgtgctacctctgtgttcataccttcattccacaattacagaatctggtcatttct 768
Query: 576 aggccttatcatgaccacctacactgcttggta 608
|| ||| |||||||| ||||||||||||||
Sbjct: 769 gggacttggaatgaccacttacactgcttggta 801
>gnl|LJGI|TC82201 homologue to UniRef100_A3RID2 Cluster: Auxin influx transport
protein; n=1; Casuarina glauca|Rep: Auxin influx
transport protein - Casuarina glauca (Swamp oak),
partial (36%)
Length = 908
Score = 139 bits (70), Expect = 5e-32
Identities = 346/438 (78%)
Strand = Plus / Plus
Query: 96 aaacttcttgtggcatggtggttctgtttatgatgcttggtttagctgtgcttccaacca 155
||||||| | ||||||||||||||||||| || |||||||| ||||| ||||| || ||
Sbjct: 459 aaacttcctctggcatggtggttctgtttgggacgcttggttcagctgcgcttcaaatca 518
Query: 156 ggtggctcaagtgctgcttacgttgccatactcattttcccaactgggaatgctctctgg 215
||||||||||||||| | || | || || ||||| || |||||||| ||||| || ||
Sbjct: 519 agtggctcaagtgctgttgacacttccgtattcattctctcaactgggcatgctatcagg 578
Query: 216 gatactttttcaactcttctatggcttgttgggtagttggacagcttacctcattagtgt 275
||| | |||| |||||||||| | |||| || ||||| ||||| || || |||||
Sbjct: 579 gatcttgcttcaggtcttctatggaatcatgggaagctggactgcttatctaatcagtgt 638
Query: 276 tctctatgttgaatacagaaccaggaaagagagagaaaaggctaatttcaggaaccatgt 335
|||||||||||||||| | | ||| || || | ||||| | | ||||| |||||||||
Sbjct: 639 tctctatgttgaataccgtagcagaaaggaaaaggaaaacgtcagtttcaagaaccatgt 698
Query: 336 catccagtggtttgaagttcttgatgggctccttggcaagcactggagaaacgtgggttt 395
|| |||||||||||||| ||||||||| | || || | |||| | | || |
Sbjct: 699 tattcagtggtttgaagtgcttgatgggttgctgggtccatattggaaagcagaagggct 758
Query: 396 gggctttaactgcacatttcttctgtttggatctgttatacaactgatagcttgtgcaag 455
| || || || || || || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 759 agctttcaattgtactttcctcctgtttggatctgtgatacagctgatagcgtgtgcaag 818
Query: 456 caacatatattacataaatgacaatctggacaagaggacttggacttacatcttcggagc 515
|||||| || |||||||||||| || |||||||||||||||||||||| ||||| |||||
Sbjct: 819 caacatctactacataaatgaccatttggacaagaggacttggacttatatctttggagc 878
Query: 516 ttgttgtgccaccactgt 533
||| ||||| ||| ||||
Sbjct: 879 ttgctgtgctacctctgt 896
>gnl|LJGI|TC70960 homologue to UniRef100_Q9FEL6 Cluster: Auxin transporter-like protein
3; n=1; Medicago truncatula|Rep: Auxin transporter-like
protein 3 - Medicago truncatula (Barrel medic), partial
(33%)
Length = 740
Score = 125 bits (63), Expect = 8e-28
Identities = 201/247 (81%)
Strand = Plus / Plus
Query: 936 cattcaccagtttataacatttgggtttgcatgcaccccattgtactttgtgtgggagaa 995
|||||||||||| ||||||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 1 cattcaccagttcataacatttggatttgcttgcactcctttatactttgtgtgggagaa 60
Query: 996 aatggtggggatgcatgagtgcaagagtctgtgcaagcgtgctatagtgagattgccggt 1055
| | | ||| ||||||| ||||||| ||| || | ||| | ||| | || ||
Sbjct: 61 attccttggggtgcatgaaaccaagagtttgttgaaaagagctttgactagactccctgt 120
Query: 1056 ggtgattccgatatggttcttggccatcattttcccctttttcggacccatcaactccac 1115
||||||||| ||||||||||| || ||||| ||||| || || || ||||| ||||| ||
Sbjct: 121 ggtgattccaatatggttcttagcaatcatattccctttctttggccccattaactcaac 180
Query: 1116 cgttggatctctccttgtcagcttcacagtttacatcatccctgctctggctcacatctt 1175
|||||||||||||||||||||||||| |||||||| |||||||| |||| ||||| |
Sbjct: 181 tgttggatctctccttgtcagcttcaccgtttacattatccctgccttggcacacatggt 240
Query: 1176 caccttt 1182
|||||||
Sbjct: 241 caccttt 247
>gnl|LJGI|BU494441 homologue to UniRef100_A7PP23 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 424
Score = 105 bits (53), Expect = 8e-22
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 415 cttctgtttggatctgttatacaactgatagcttgtgcaagcaacatatattacataaat 474
||||| |||||||| || || || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 308 cttctatttggatcagtgattcagcttatagcatgtgcaagtaacatctattacataaat 367
Query: 475 gacaatctggacaagaggacttggacttacatcttcggagcttgttgtgccaccact 531
||||| ||||||| |||||||||||||| ||||| ||||| || ||||||||||||
Sbjct: 368 gacaaattggacaaaaggacttggacttatatctttggagcatgctgtgccaccact 424
>gnl|LJGI|TC67912 homologue to UniRef100_Q9FEL8 Cluster: Auxin transporter-like protein
1; n=1; Medicago truncatula|Rep: Auxin transporter-like
protein 1 - Medicago truncatula (Barrel medic), partial
(50%)
Length = 1008
Score = 77.8 bits (39), Expect = 2e-13
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 919 gctgtcatcttaatgctcattcaccagtttataacatttgggtttgcatgcaccccattg 978
||||||||| |||||||||| |||||||| || || || |||||||| || || ||||||
Sbjct: 230 gctgtcatcctaatgctcatccaccagttcatcaccttcgggtttgcttgtacgccattg 289
Query: 979 tactttgtgtgggagaaaatggtggggatgcatga 1013
|| ||||||||||||||| || | || ||||||||
Sbjct: 290 tattttgtgtgggagaaagtgataggaatgcatga 324
Score = 60.0 bits (30), Expect = 4e-08
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1132 gtcagcttcacagtttacatcatccctgc-tctggctcacatcttcacctttaaatcatc 1190
||||| ||||||||||||||||||||||| ||| ||||| || |||||||||| || |
Sbjct: 443 gtcagtttcacagtttacatcatccctgcatct-gctcatatgctcacctttaagtctgc 501
Query: 1191 ctctgctagacagaatgc 1208
|||||| |||||||||||
Sbjct: 502 ctctgcaagacagaatgc 519
>gnl|LJGI|TC63986 similar to UniRef100_A7PP23 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 918
Score = 67.9 bits (34), Expect = 2e-10
Identities = 127/158 (80%)
Strand = Plus / Plus
Query: 106 tggcatggtggttctgtttatgatgcttggtttagctgtgcttccaaccaggtggctcaa 165
||||||||||| |||| |||||||| ||||| |||||||| || || ||||| |||||
Sbjct: 732 tggcatggtggctctgcctatgatgcctggttcagctgtgcctcaaatcaggttgctcag 791
Query: 166 gtgctgcttacgttgccatactcattttcccaactgggaatgctctctgggatacttttt 225
|| ||| | || |||| ||||| || || || ||||||||||| || ||||| | ||
Sbjct: 792 gttctgttaactctgccttactctttctctcagctgggaatgctttcagggatcatattc 851
Query: 226 caactcttctatggcttgttgggtagttggacagctta 263
||| |||||||||||||| | || |||||||| |||||
Sbjct: 852 caagtcttctatggcttgcttggaagttggactgctta 889
>gnl|LJGI|TC62233 homologue to UniRef100_Q76DT1 Cluster: AUX1-like auxin influx carrier
protein; n=1; Pisum sativum|Rep: AUX1-like auxin influx
carrier protein - Pisum sativum (Garden pea), partial
(26%)
Length = 704
Score = 60.0 bits (30), Expect = 4e-08
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 1048 ttgccggtggtgattccgatatggttcttggccatcattttcccctttttcggacccatc 1107
||||| |||||||| || |||||||||||||| || || || ||||| || || |||||
Sbjct: 15 ttgccagtggtgataccaatatggttcttggctataatatttcccttctttggtcccatt 74
Query: 1108 aactccaccgttggatctctccttgtcagcttcacagtttacatcatccc 1157
||||| | |||||| |||| ||||| ||||| || |||||| |||||||
Sbjct: 75 aactctgctgttggagctcttcttgttagctttaccgtttacgtcatccc 124