Miyakogusa Predicted Gene

Lj3g3v3475540.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3475540.1 tr|G3NYS9|G3NYS9_GASAC Transporter
OS=Gasterosteus aculeatus GN=SLC6A17 (2 of 2) PE=3 SV=1,36.62,2.8,
,CUFF.45837.1
         (328 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC61320 similar to UniRef100_A7QYH0 Cluster: Chromosome...   464   e-130
gnl|LJGI|TC58967 homologue to UniRef100_A2A1E8 Cluster: Nucleopo...   454   e-127
gnl|LJGI|FS340728 similar to UniRef100_A7P636 Cluster: Chromosom...    62   2e-09
gnl|LJGI|AV428507 similar to UniRef100_A7P636 Cluster: Chromosom...    54   5e-07

>gnl|LJGI|TC61320 similar to UniRef100_A7QYH0 Cluster: Chromosome undetermined
           scaffold_247, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_247,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (42%)
          Length = 1237

 Score =  464 bits (234), Expect = e-130
 Identities = 283/299 (94%), Gaps = 4/299 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgttacctcagtctctctcaaccgctgtgctccttctctcaacccctacaccccatcgtg 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 50  tgttacctcagtctctctcaaccgctgtgctccttctctcaacccctaaaccccatcgtg 109

                                                                       
Query: 65  ccgccaccgtccctggcgcgccgctgccgctcttgtttttcatcgtccaacactttggct 124
            ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 110 tcgccaccatccctggcgcgccgctgccgctcttgtttttcatcgttcaacactttggct 169

                                                                       
Query: 125 caaggttattggccgcaa----aactgaggtcagtggttctccatcctcgatctgttaac 180
           ||||||| |||||||||     ||||||||||||||||||||||||||||||||||||||
Sbjct: 170 caaggttcttggccgcacgtacaactgaggtcagtggttctccatcctcgatctgttaac 229

                                                                       
Query: 181 gctgaggaaggccagcaactccaatttctcctccacgccttccaaacgcatccttgcgag 240
           |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 230 gctgaggaaggccagcgactccaatttcttctctacgccttccaaacgcatccttgcgag 289

                                                                      
Query: 241 aaggcctcgcctcttcatcctcctcccctgcacattggcccctcacggtggtggaaggt 299
           ||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 290 aaggcctagcctcttcatcctcctcccctgcacattggccgctcacggtggcggaaggt 348


>gnl|LJGI|TC58967 homologue to UniRef100_A2A1E8 Cluster: Nucleoporin; n=1; Lotus
           japonicus|Rep: Nucleoporin - Lotus japonicus, partial
           (23%)
          Length = 1122

 Score =  454 bits (229), Expect = e-127
 Identities = 280/293 (95%), Gaps = 3/293 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  cagtctctctcaaccgctgtgctccttctctcaacccctacacccc-atcgtgccgccac 71
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 20  cagtctctctcaaccgctgtgctcctt-tctcaacccctacacccccatcgtgccgccac 78

                                                                       
Query: 72  cgtccctggcgcgccgctgccgctcttgtttttcatcgtccaacactttggctcaaggtt 131
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 79  cgtccctggcgcgccgctgccgctcttgtttttcaccgtccaacactttggctcaaggtt 138

                                                                       
Query: 132 attggccgcaaaactgaggtcagtggttctccatcctcgatctgttaacgctgaggaagg 191
            |||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 139 cttggccacagaactgaggtcagtggttctccatcc-cgatctgttaacgccgaggaagg 197

                                                                       
Query: 192 ccagcaactccaatttctcctccacgccttccaaacgcatccttgcgagaaggcctcgcc 251
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ccagcgactccaatttctcctgcacgccttccaaacgcatccttgcgagaaggcctcgcc 257

                                                                
Query: 252 tcttcatcctcctcccctgcacattggcccctcacggtggtggaaggttaggt 304
           ||||||||||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 258 tcttcatcctcctcccctgcacattagcccttcacggtggtggcaggttaggt 310


>gnl|LJGI|FS340728 similar to UniRef100_A7P636 Cluster: Chromosome chr4 scaffold_6,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_6, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (27%)
          Length = 722

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 65  ccgccaccgtccctggcgcgccgctgccgctcttgtttt 103
           ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 146 ccgcctccgtccctgccgcgccgctgccgctcttgtttt 184


>gnl|LJGI|AV428507 similar to UniRef100_A7P636 Cluster: Chromosome chr4 scaffold_6,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_6, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (8%)
          Length = 336

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 65  ccgccaccgtccctggcgcgccgctgccgctcttgtttt 103
           ||||| ||||||||| ||||||| |||||||||||||||
Sbjct: 115 ccgcctccgtccctgccgcgccgttgccgctcttgtttt 153