Miyakogusa Predicted Gene
- Lj3g3v3430220.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3430220.1 tr|D7M1Q8|D7M1Q8_ARALL Protein binding protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_910,31.3,0.000004,RNI-like,NULL; EBF1 (EIN3-BINDING F
BOX PROTEIN 1), UBIQUITIN-PROTEIN LIGASE,NULL; F-BOX/LEUCINE
RIC,NODE_22983_length_1804_cov_27.210644.path2.1
(570 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS346553 similar to UniRef100_A7QUZ0 Cluster: Chromosom... 597 e-170
gnl|LJGI|BP032005 weakly similar to UniRef100_Q8VYT5 Cluster: F-... 335 2e-91
gnl|LJGI|FS360087 weakly similar to UniRef100_A7PKI1 Cluster: Ch... 210 7e-54
>gnl|LJGI|FS346553 similar to UniRef100_A7QUZ0 Cluster: Chromosome chr16 scaffold_182,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_182, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 600
Score = 597 bits (301), Expect = e-170
Identities = 313/317 (98%)
Strand = Plus / Minus
Query: 254 aggactgctgggggttggataatagtgtgttgagtctcgcaatcatttgcaggcgggtag 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aggactgctgggggttggataatagtgtgttgagtctcgcaatcatttgcaggcgggtag 541
Query: 314 aattgtgttacttagaaggatgctcattgcttacaacggaaggtttggagctggtaatag 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aattgtgttacttagaaggatgctcattgcttacaacggaaggtttggagctggtaatag 481
Query: 374 attcttggaaggagcttcaatgccttagagttgtctcgtgtaaaaatataaaggatagtg 433
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 480 attcttggaaggagcttcaatgccttagagttgtttcgtgtaaaaatataaaggatagtg 421
Query: 434 atatctctcctacactcgcaaccttgttcgccacgctcaaagagttgagatggaggccag 493
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atatttttcctacactcgcaaccttgttcgccacgctcaaagagttgagatggaggccag 361
Query: 494 acacaaaacaccttctgtcatcaagtcttgaggagataagcatgggaaagaaaggtggta 553
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acacaaaaccccttctgtcatcaagtcttgaggagataagcatgggaaagaaaggtggta 301
Query: 554 aatttttcaggctatga 570
|||||||||||||||||
Sbjct: 300 aatttttcaggctatga 284
>gnl|LJGI|BP032005 weakly similar to UniRef100_Q8VYT5 Cluster: F-box protein
At5g07670; n=1; Arabidopsis thaliana|Rep: F-box protein
At5g07670 - Arabidopsis thaliana (Mouse-ear cress),
partial (10%)
Length = 449
Score = 335 bits (169), Expect = 2e-91
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 138 tttggggttctgccccgcgctcgaacggttgcatttgcagaagtgccagttgcgggataa 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttggggttctgccccgcgctcgaacggttgcatttgcagaagtgccagttgcgggataa 390
Query: 198 gaacggcactggagctgttttctctgtttgcagagctgccagggaggtcattcttcagga 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaacggcactggagctgttttctctgtttgcagagctgccagggaggtcattcttcagga 330
Query: 258 ctgctgggggttggataatagtgtgttgagtctcgcaatcatttgcagg 306
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgctgggggttggataatagtgtgttgagtctcgcaatcatttgcagg 281
>gnl|LJGI|FS360087 weakly similar to UniRef100_A7PKI1 Cluster: Chromosome chr15
scaffold_19, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_19, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (24%)
Length = 704
Score = 210 bits (106), Expect = 7e-54
Identities = 274/330 (83%)
Strand = Plus / Minus
Query: 233 ctgccagggaggtcattcttcaggactgctgggggttggataatagtgtgttgagtctcg 292
||||||||||| | |||||||||||||||||||| ||||||||||| |||| ||||| |
Sbjct: 693 ctgccagggagattattcttcaggactgctggggattggataatagcatgttcagtcttg 634
Query: 293 caatcatttgcaggcgggtagaattgtgttacttagaaggatgctcattgcttacaacgg 352
|| | ||||||||||||||| ||||| || ||||||||||||||||||||| ||||| |
Sbjct: 633 cagttatttgcaggcgggtaaaattgatttgcttagaaggatgctcattgctaacaacag 574
Query: 353 aaggtttggagctggtaatagattcttggaaggagcttcaatgccttagagttgtctcgt 412
||||||||||| ||||| ||| |||||||| ||||| | |||||||| ||||| |
Sbjct: 573 aaggtttggagtctgtaattcatttgtggaaggaacttcagagtcttagagtagtctcat 514
Query: 413 gtaaaaatataaaggatagtgatatctctcctacactcgcaaccttgttcgccacgctca 472
|||| |||| ||||| ||||| ||||||||| |||| ||||||||||| |||| ||||
Sbjct: 513 gtaagcatatcaaggacagtgaaatctctcctgcacttgcaaccttgtttaccaccctca 454
Query: 473 aagagttgagatggaggccagacacaaaacaccttctgtcatcaagtcttgaggagataa 532
|||| |||| |||||| |||||||| || || || ||||||| |||| | |||||
Sbjct: 453 aagaattgaaatggagtccagacaccaagtcactacttccatcaagacttgtagggataa 394
Query: 533 gcatgggaaagaaaggtggtaaatttttca 562
|||| ||||||||||| || ||||||||||
Sbjct: 393 gcataggaaagaaaggcgggaaatttttca 364