Miyakogusa Predicted Gene

Lj3g3v3374660.2
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3374660.2 tr|D8QZF9|D8QZF9_SELML Ubiquitin-protein ligase,
PUB43 OS=Selaginella moellendorffii GN=PUB43-2 PE=4,29.52,3e-18,ARM
repeat,Armadillo-type fold; no description,Armadillo-like helical;
seg,NULL; PUTATIVE ARM REPEAT,CUFF.45730.2
         (1160 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68585 weakly similar to UniRef100_Q8GSZ9 Cluster: Arm...  1049   0.0  
gnl|LJGI|TC62761 similar to UniRef100_A7QRU0 Cluster: Chromosome...   240   2e-62

>gnl|LJGI|TC68585 weakly similar to UniRef100_Q8GSZ9 Cluster: Armadillo
            repeat-containing protein-like; n=1; Oryza sativa
            Japonica Group|Rep: Armadillo repeat-containing
            protein-like - Oryza sativa subsp. japonica (Rice),
            partial (32%)
          Length = 724

 Score = 1049 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Plus

                                                                        
Query: 624  ggtacacattatggattcaagcactggaagtaactcactcacaagaagtatcatagctga 683
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    ggtacacattatggattcaagcactggaagtaactcactcacaagaagtatcatagctga 60

                                                                        
Query: 684  gagtattgcaggtattgtaatccggttcacgtgtgcctctgacaagaaactacaacttct 743
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gagtattgcaggtattgtaatccggttcacgtgtgcctctgacaagaaactacaacttct 120

                                                                        
Query: 744  ttcagcagagcaaggggtgattcctttgcttgtaaaagttctctcaggtggttcaacaat 803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ttcagcagagcaaggggtgattcctttgcttgtaaaagttctctcaggtggttcaacaat 180

                                                                        
Query: 804  cacaaaatttagagctgctacctctctggctcaactatcacaaaattctctacctctcag 863
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181  cacaaaatttagagctgctacctctctggcttaactatcacaaaattctctacctctcag 240

                                                                        
Query: 864  gaggtcttggaagtcaaggtggttgtgtgcttctcactcagttaataatgcatattgtga 923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gaggtcttggaagtcaaggtggttgtgtgcttctcactcagttaataatgcatattgtga 300

                                                                        
Query: 924  agttcatgatggctattgctttgtgaacagcactttttgtctgattaaagcaggtgctgt 983
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  agttcatgatggctattgctttgtgaacagcactttttgtctgattaaagcaggtgctgt 360

                                                                        
Query: 984  ttctccacttatccaaatattggtagataaggatgaggaagcagtggaagcttctctgag 1043
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  ttctccacttatccaaatattggtagataaggatgaggaagcagtggaagcttctctgag 420

                                                                        
Query: 1044 tgccctttcaactctcttgcaggatgaaatttgggaaggaggtgtgaaatgcatagctga 1103
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 421  tgccctttcaactctcttgcaggatgaaatttgggaaggaggtgtgaaatgcgtagctga 480

                                                                     
Query: 1104 attgtcaggagtagaccctattgtgaaaattttagaaactggtaatttgaaggttca 1160
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  attgtcaggagtagaccctattgtgaaaattttagaaactggtaatttgaaggttca 537


>gnl|LJGI|TC62761 similar to UniRef100_A7QRU0 Cluster: Chromosome chr13 scaffold_152,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr13 scaffold_152, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (33%)
          Length = 781

 Score =  240 bits (121), Expect = 2e-62
 Identities = 305/363 (84%), Gaps = 5/363 (1%)
 Strand = Plus / Plus

                                                                        
Query: 727  aagaaactacaacttctttcagcagagcaaggggtgattcctttgcttgtaaaagttctc 786
            ||||||||||||||||||||||| || |  |||||||||||||||||||||||| | |||
Sbjct: 36   aagaaactacaacttctttcagccgaactcggggtgattcctttgcttgtaaaattactc 95

                                                                        
Query: 787  tcaggtggttcaacaatcacaaaatttagagctgctacctctctggctcaactatcacaa 846
            ||| | |||||| ||||||| ||||  || ||||| |  ||||| || ||||||||||| 
Sbjct: 96   tcaagcggttcaccaatcacgaaatcaagggctgcaaaatctctagcacaactatcacag 155

                                                                        
Query: 847  aattctctacctctcaggaggtcttggaagtcaaggtggttgtgtgcttctcactcagtt 906
            ||||||||  |||| ||||  ||| | ||||| || ||| | |||| ||| | |||||| 
Sbjct: 156  aattctctgtctctaaggaaatctcgaaagtcgagatggatatgtgtttccccctcagtg 215

                                                                        
Query: 907  aataatgcatattgtgaagttcatgatggctattgctttgtgaacagcactttttgtctg 966
            |||   ||||||||||||||||||||||||||||||||||| || || || |||||| | 
Sbjct: 216  aat---gcatattgtgaagttcatgatggctattgctttgtcaatagaacattttgttta 272

                                                                        
Query: 967  attaaagcaggtgctgtttctccacttatccaaatattggtagataaggatgag-gaagc 1025
             | || |||||||||||||||||||| ||||||||| ||| ||||||||| ||| |||||
Sbjct: 273  gtcaaggcaggtgctgtttctccactcatccaaatactggaagataagga-gagagaagc 331

                                                                        
Query: 1026 agtggaagcttctctgagtgccctttcaactctcttgcaggatgaaatttgggaaggagg 1085
            ||| |||||| ||||||||||||||||||||||  |||| |||||||| |||||||| ||
Sbjct: 332  agttgaagctgctctgagtgccctttcaactcttctgcaagatgaaatctgggaaggtgg 391

               
Query: 1086 tgt 1088
            |||
Sbjct: 392  tgt 394