Miyakogusa Predicted Gene
- Lj3g3v3374660.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3374660.2 tr|D8QZF9|D8QZF9_SELML Ubiquitin-protein ligase,
PUB43 OS=Selaginella moellendorffii GN=PUB43-2 PE=4,29.52,3e-18,ARM
repeat,Armadillo-type fold; no description,Armadillo-like helical;
seg,NULL; PUTATIVE ARM REPEAT,CUFF.45730.2
(1160 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68585 weakly similar to UniRef100_Q8GSZ9 Cluster: Arm... 1049 0.0
gnl|LJGI|TC62761 similar to UniRef100_A7QRU0 Cluster: Chromosome... 240 2e-62
>gnl|LJGI|TC68585 weakly similar to UniRef100_Q8GSZ9 Cluster: Armadillo
repeat-containing protein-like; n=1; Oryza sativa
Japonica Group|Rep: Armadillo repeat-containing
protein-like - Oryza sativa subsp. japonica (Rice),
partial (32%)
Length = 724
Score = 1049 bits (529), Expect = 0.0
Identities = 535/537 (99%)
Strand = Plus / Plus
Query: 624 ggtacacattatggattcaagcactggaagtaactcactcacaagaagtatcatagctga 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacacattatggattcaagcactggaagtaactcactcacaagaagtatcatagctga 60
Query: 684 gagtattgcaggtattgtaatccggttcacgtgtgcctctgacaagaaactacaacttct 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagtattgcaggtattgtaatccggttcacgtgtgcctctgacaagaaactacaacttct 120
Query: 744 ttcagcagagcaaggggtgattcctttgcttgtaaaagttctctcaggtggttcaacaat 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcagcagagcaaggggtgattcctttgcttgtaaaagttctctcaggtggttcaacaat 180
Query: 804 cacaaaatttagagctgctacctctctggctcaactatcacaaaattctctacctctcag 863
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 cacaaaatttagagctgctacctctctggcttaactatcacaaaattctctacctctcag 240
Query: 864 gaggtcttggaagtcaaggtggttgtgtgcttctcactcagttaataatgcatattgtga 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggtcttggaagtcaaggtggttgtgtgcttctcactcagttaataatgcatattgtga 300
Query: 924 agttcatgatggctattgctttgtgaacagcactttttgtctgattaaagcaggtgctgt 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agttcatgatggctattgctttgtgaacagcactttttgtctgattaaagcaggtgctgt 360
Query: 984 ttctccacttatccaaatattggtagataaggatgaggaagcagtggaagcttctctgag 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttctccacttatccaaatattggtagataaggatgaggaagcagtggaagcttctctgag 420
Query: 1044 tgccctttcaactctcttgcaggatgaaatttgggaaggaggtgtgaaatgcatagctga 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 421 tgccctttcaactctcttgcaggatgaaatttgggaaggaggtgtgaaatgcgtagctga 480
Query: 1104 attgtcaggagtagaccctattgtgaaaattttagaaactggtaatttgaaggttca 1160
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attgtcaggagtagaccctattgtgaaaattttagaaactggtaatttgaaggttca 537
>gnl|LJGI|TC62761 similar to UniRef100_A7QRU0 Cluster: Chromosome chr13 scaffold_152,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_152, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 781
Score = 240 bits (121), Expect = 2e-62
Identities = 305/363 (84%), Gaps = 5/363 (1%)
Strand = Plus / Plus
Query: 727 aagaaactacaacttctttcagcagagcaaggggtgattcctttgcttgtaaaagttctc 786
||||||||||||||||||||||| || | |||||||||||||||||||||||| | |||
Sbjct: 36 aagaaactacaacttctttcagccgaactcggggtgattcctttgcttgtaaaattactc 95
Query: 787 tcaggtggttcaacaatcacaaaatttagagctgctacctctctggctcaactatcacaa 846
||| | |||||| ||||||| |||| || ||||| | ||||| || |||||||||||
Sbjct: 96 tcaagcggttcaccaatcacgaaatcaagggctgcaaaatctctagcacaactatcacag 155
Query: 847 aattctctacctctcaggaggtcttggaagtcaaggtggttgtgtgcttctcactcagtt 906
|||||||| |||| |||| ||| | ||||| || ||| | |||| ||| | ||||||
Sbjct: 156 aattctctgtctctaaggaaatctcgaaagtcgagatggatatgtgtttccccctcagtg 215
Query: 907 aataatgcatattgtgaagttcatgatggctattgctttgtgaacagcactttttgtctg 966
||| ||||||||||||||||||||||||||||||||||| || || || |||||| |
Sbjct: 216 aat---gcatattgtgaagttcatgatggctattgctttgtcaatagaacattttgttta 272
Query: 967 attaaagcaggtgctgtttctccacttatccaaatattggtagataaggatgag-gaagc 1025
| || |||||||||||||||||||| ||||||||| ||| ||||||||| ||| |||||
Sbjct: 273 gtcaaggcaggtgctgtttctccactcatccaaatactggaagataagga-gagagaagc 331
Query: 1026 agtggaagcttctctgagtgccctttcaactctcttgcaggatgaaatttgggaaggagg 1085
||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||| ||
Sbjct: 332 agttgaagctgctctgagtgccctttcaactcttctgcaagatgaaatctgggaaggtgg 391
Query: 1086 tgt 1088
|||
Sbjct: 392 tgt 394