Miyakogusa Predicted Gene
- Lj3g3v3360960.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3360960.1 Non Chatacterized Hit- tr|D7LBF2|D7LBF2_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,88,3e-19,seg,NULL; PROTEIN RER1,Retrieval of early ER protein
Rer1; Rer1,Retrieval of early ER protein
Rer1,NODE_16275_length_817_cov_327.631592.path2.1
(198 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75451 similar to UniRef100_A7P8Y5 Cluster: Chromosome... 392 e-109
gnl|LJGI|TC63902 similar to UniRef100_A7P8Y5 Cluster: Chromosome... 377 e-104
gnl|LJGI|FS338455 similar to UniRef100_A7P8Y5 Cluster: Chromosom... 270 3e-72
gnl|LJGI|TC61297 similar to UniRef100_A7P8Y5 Cluster: Chromosome... 178 8e-45
gnl|LJGI|TC57618 similar to UniRef100_A7P8Y5 Cluster: Chromosome... 178 8e-45
gnl|LJGI|TC75781 similar to UniRef100_A7PLG2 Cluster: Chromosome... 58 2e-08
gnl|LJGI|BP043461 similar to UniRef100_A7PLG2 Cluster: Chromosom... 56 8e-08
gnl|LJGI|TC73458 similar to UniRef100_A7PLG2 Cluster: Chromosome... 56 8e-08
>gnl|LJGI|TC75451 similar to UniRef100_A7P8Y5 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (98%)
Length = 1118
Score = 392 bits (198), Expect = e-109
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 1 atgactttcttttctgtatttgatgttcctgtcttctggccaatattgctctgttactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgactttcttttctgtatttgatgttcctgtcttctggccaatattgctctgttactgg 540
Query: 61 atcgttctgtttgtcctaacaatgaggcgccaaattgcacacatgatcaaatacaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcgttctgtttgtcctaacaatgaggcgccaaattgcacacatgatcaaatacaaatat 600
Query: 121 attccattgaaccttggaaagcagaagtacggtggcaagaaatcttctgcaagtagcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 attccattgaaccttggaaagcagaagtacggtggcaagaaatcttctgcaagtagcagc 660
Query: 181 ggctctcgtgcagactaa 198
||||||||||||||||||
Sbjct: 661 ggctctcgtgcagactaa 678
>gnl|LJGI|TC63902 similar to UniRef100_A7P8Y5 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (98%)
Length = 736
Score = 377 bits (190), Expect = e-104
Identities = 197/198 (99%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 1 atgactttcttttctgtatttgatgttcctgtcttctggccaatattgctctgttactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atgactttcttttctgtatttgatgttcctgtcttctggccaatattgctctgttactgg 585
Query: 61 atcgttctgtttgtcctaacaatgaggcgccaaattgcacacatgatcaaatacaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atcgttctgtttgtcctaacaatgaggcgccaaattgcacacatgatcaaatacaaatat 645
Query: 121 attccattgaaccttggaaagcagaagtacggtggcaagaaatcttctgcaagtagcagc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 646 attccattgaaccttggaaagcagaagtac-gtggcaagaaatcttctgcaagtagcagc 704
Query: 181 ggctctcgtgcagactaa 198
||||||||||||||||||
Sbjct: 705 ggctctcgtgcagactaa 722
>gnl|LJGI|FS338455 similar to UniRef100_A7P8Y5 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (88%)
Length = 787
Score = 270 bits (136), Expect = 3e-72
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1 atgactttcttttctgtatttgatgttcctgtcttctggccaatattgctctgttactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 atgactttcttttctgtatttgatgttcctgtcttctggccaatattgctctgttactgg 711
Query: 61 atcgttctgtttgtcctaacaatgaggcgccaaattgcacacatgatcaaatacaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 atcgttctgtttgtcctaacaatgaggcgccaaattgcacacatgatcaaatacaaatat 771
Query: 121 attccattgaaccttg 136
||||||||||||||||
Sbjct: 772 attccattgaaccttg 787
>gnl|LJGI|TC61297 similar to UniRef100_A7P8Y5 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (95%)
Length = 744
Score = 178 bits (90), Expect = 8e-45
Identities = 153/174 (87%)
Strand = Plus / Plus
Query: 1 atgactttcttttctgtatttgatgttcctgtcttctggccaatattgctctgttactgg 60
||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 504 atgaccttcttttccgtatttgatgttcctgtcttctggcctatattactctgttactgg 563
Query: 61 atcgttctgtttgtcctaacaatgaggcgccaaattgcacacatgatcaaatacaaatat 120
||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 564 gctgttctctttgtccttaccatgaggcgccagattgcacacatgatcaaatacaagtat 623
Query: 121 attccattgaaccttggaaagcagaagtacggtggcaagaaatcttctgcaagt 174
|| ||||| ||| | |||||||||||||| || | || |||||||||||||||
Sbjct: 624 atcccattcaacatcggaaagcagaagtatggcagtaacaaatcttctgcaagt 677
>gnl|LJGI|TC57618 similar to UniRef100_A7P8Y5 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (95%)
Length = 1030
Score = 178 bits (90), Expect = 8e-45
Identities = 153/174 (87%)
Strand = Plus / Plus
Query: 1 atgactttcttttctgtatttgatgttcctgtcttctggccaatattgctctgttactgg 60
||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 463 atgaccttcttttccgtatttgatgttcctgtcttctggcctatattactctgttactgg 522
Query: 61 atcgttctgtttgtcctaacaatgaggcgccaaattgcacacatgatcaaatacaaatat 120
||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 523 gctgttctctttgtccttaccatgaggcgccagattgcacacatgatcaaatacaagtat 582
Query: 121 attccattgaaccttggaaagcagaagtacggtggcaagaaatcttctgcaagt 174
|| ||||| ||| | |||||||||||||| || | || |||||||||||||||
Sbjct: 583 atcccattcaacatcggaaagcagaagtatggcagtaacaaatcttctgcaagt 636
>gnl|LJGI|TC75781 similar to UniRef100_A7PLG2 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (84%)
Length = 1187
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1 atgactttcttttctgtatttgatgttcctgtcttctggccaata 45
|||||||||||| || |||||||||||||||||||||||||||
Sbjct: 458 atgactttctttagtgcgtttgatgttcctgtcttctggccaata 502
>gnl|LJGI|BP043461 similar to UniRef100_A7PLG2 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 505
Score = 56.0 bits (28), Expect = 8e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 atgactttcttttctgtatttgatgttcctgtcttctggccaat 44
|||||||||||| || ||||||||||||||||||||||||||
Sbjct: 468 atgactttctttagtgcctttgatgttcctgtcttctggccaat 425
>gnl|LJGI|TC73458 similar to UniRef100_A7PLG2 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (80%)
Length = 1007
Score = 56.0 bits (28), Expect = 8e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 atgactttcttttctgtatttgatgttcctgtcttctggccaat 44
|||||||||||| || ||||||||||||||||||||||||||
Sbjct: 477 atgactttctttagtgcctttgatgttcctgtcttctggccaat 520