Miyakogusa Predicted Gene
- Lj3g3v3338570.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3338570.1 tr|G7JG42|G7JG42_MEDTR SWI/SNF complex subunit
SMARCC1 OS=Medicago truncatula GN=MTR_4g069830 PE=4
S,72.8,0,ZF_ZZ_2,Zinc finger, ZZ-type; SWIRM,SWIRM domain; SANT,SANT
domain; ZZ,Zinc finger, ZZ-type; Myb_DNA,CUFF.45662.1
(2640 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV427373 similar to UniRef100_Q8VY05-2 Cluster: Isoform... 779 0.0
gnl|LJGI|TC58733 similar to UniRef100_Q8VY05-2 Cluster: Isoform ... 472 e-132
gnl|LJGI|TC77848 weakly similar to UniRef100_A3P4U5 Cluster: Rhs... 428 e-119
gnl|LJGI|TC67104 weakly similar to UniRef100_A3P4U5 Cluster: Rhs... 280 4e-74
gnl|LJGI|BP064760 137 4e-31
>gnl|LJGI|AV427373 similar to UniRef100_Q8VY05-2 Cluster: Isoform 2 of Q8VY05 ; n=1;
Arabidopsis thaliana|Rep: Isoform 2 of Q8VY05 -
Arabidopsis thaliana (Mouse-ear cress), partial (4%)
Length = 393
Score = 779 bits (393), Expect = 0.0
Identities = 393/393 (100%)
Strand = Plus / Plus
Query: 1874 ctgggaaaatgaaggactctgaaatggatgttgatattggttctaattcgttgccatcag 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggaaaatgaaggactctgaaatggatgttgatattggttctaattcgttgccatcag 60
Query: 1934 aaaagattgactctcagccaccatttacaccaatatcatcccaatataatggggcagaaa 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaagattgactctcagccaccatttacaccaatatcatcccaatataatggggcagaaa 120
Query: 1994 aggatgtagatatgatatcgtcttcgcatccaattaaatcaaattctggtgctgaaaatg 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggatgtagatatgatatcgtcttcgcatccaattaaatcaaattctggtgctgaaaatg 180
Query: 2054 atgcaactacagggacaggtgaagatcatgtggaaaatgctacgaaagtgaaagatgatg 2113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgcaactacagggacaggtgaagatcatgtggaaaatgctacgaaagtgaaagatgatg 240
Query: 2114 gtgcaaaaactaatttggataacaattttgaaaaattgaaacgtgctgcagtttctacac 2173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgcaaaaactaatttggataacaattttgaaaaattgaaacgtgctgcagtttctacac 300
Query: 2174 ttgctgcagcagctgtaaaggcaaaacttctagcagatcaggaagaagatgaaatccgac 2233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgctgcagcagctgtaaaggcaaaacttctagcagatcaggaagaagatgaaatccgac 360
Query: 2234 aactaacttcttcgttgatagaaaagcagttgc 2266
|||||||||||||||||||||||||||||||||
Sbjct: 361 aactaacttcttcgttgatagaaaagcagttgc 393
>gnl|LJGI|TC58733 similar to UniRef100_Q8VY05-2 Cluster: Isoform 2 of Q8VY05 ; n=1;
Arabidopsis thaliana|Rep: Isoform 2 of Q8VY05 -
Arabidopsis thaliana (Mouse-ear cress), partial (16%)
Length = 773
Score = 472 bits (238), Expect = e-132
Identities = 241/242 (99%)
Strand = Plus / Plus
Query: 1 atgttgccttctttctttaatggcaaaagtgaaaatcggactccggatatatacatgggg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 532 atgttgccttctttctttaatggcaaaagtgaaaatcggactccggatatatacatggag 591
Query: 61 gtacgaaattggataatgaagaaatttcattcaaatccaaatgtacaaattgaatcgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtacgaaattggataatgaagaaatttcattcaaatccaaatgtacaaattgaatcgaaa 651
Query: 121 gatttgtcagatcttgatgttggagaattggatgctaggcaagagataatggagtttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gatttgtcagatcttgatgttggagaattggatgctaggcaagagataatggagtttctg 711
Query: 181 gactattggggtttaattaacttccacccattcccttcgacgggttctgcggtgcccacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gactattggggtttaattaacttccacccattcccttcgacgggttctgcggtgcccacc 771
Query: 241 tc 242
||
Sbjct: 772 tc 773
>gnl|LJGI|TC77848 weakly similar to UniRef100_A3P4U5 Cluster: Rhs element Vgr protein;
n=1; Burkholderia pseudomallei 1106a|Rep: Rhs element Vgr
protein - Burkholderia pseudomallei (strain 1106a),
partial (4%)
Length = 977
Score = 428 bits (216), Expect = e-119
Identities = 225/228 (98%)
Strand = Plus / Plus
Query: 2413 tccagaggtgtaccaccatctgtacaaaccaatagaattcctatgaattttgcaaactca 2472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccagaggtgtaccaccatctgtacaaaccaatagaattcctatgaattttgcaaactca 60
Query: 2473 cttcccagacctcaaatcgccatgaatccccaaagacaaatgatatctagacctgtgggc 2532
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 61 cttcccagacctcaaatcgccatgaatcccctaagacgaatgatatctagacctgtgggc 120
Query: 2533 actgcggcttcgactcttccaaacccctttgcatctgcaaatccagcaggaaattcagtt 2592
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actgcggcttcgactcttccgaacccctttgcatctgcaaatccagcaggaaattcagtt 180
Query: 2593 cggccatccagccaggaaaatctttcttctgttgggacaaaataaatg 2640
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cggccatccagccaggaaaatctttcttctgttgggacaaaataaatg 228
>gnl|LJGI|TC67104 weakly similar to UniRef100_A3P4U5 Cluster: Rhs element Vgr protein;
n=1; Burkholderia pseudomallei 1106a|Rep: Rhs element Vgr
protein - Burkholderia pseudomallei (strain 1106a),
partial (4%)
Length = 670
Score = 280 bits (141), Expect = 4e-74
Identities = 147/149 (98%)
Strand = Plus / Plus
Query: 2492 ccatgaatccccaaagacaaatgatatctagacctgtgggcactgcggcttcgactcttc 2551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccatgaatccccaaagacaaatgatatctagacctgtgggcactgcggcttcgactcttc 60
Query: 2552 caaacccctttgcatctgcaaatccagcaggaaattcagttcggccatccagccaggaaa 2611
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaacccctttgcatctgcaaatcccgcaggaaattcagttcggccatccagccaggaaa 120
Query: 2612 atctttcttctgttgggacaaaataaatg 2640
|||||||||||||||||||||||||||||
Sbjct: 121 atctttcttctgttgggacaaaataaatg 149
>gnl|LJGI|BP064760
Length = 390
Score = 137 bits (69), Expect = 4e-31
Identities = 109/121 (90%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 2521 agacctgtgggcactgcggcttcgactcttccaaacccctttgcatctgcaaatccagca 2580
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 390 agacctgtgggccctgcggcttcgactcttcccaacccctttgcatctgccaatcccgcc 331
Query: 2581 ggaaattcagttcggccatccagccaggaaaatctttcttctgttggg-acaaaataaat 2639
|| ||||| |||||||| ||| ||| |||||||||||||||||||||| || ||||||||
Sbjct: 330 gggaattccgttcggccctcccgcccggaaaatctttcttctgttgggcaccaaataaat 271
Query: 2640 g 2640
|
Sbjct: 270 g 270