Miyakogusa Predicted Gene
- Lj3g3v3337990.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3337990.1 Non Chatacterized Hit- tr|F6HA22|F6HA22_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,25.77,8e-19,PPR: pentatricopeptide repeat domain,Pentatricopeptide
repeat; PPR,Pentatricopeptide repeat;
PPR_2,P,NODE_57246_length_1217_cov_19.037798.path1.1
(921 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV409767 weakly similar to UniRef100_Q0DEH2 Cluster: Os... 460 e-129
gnl|LJGI|TC82170 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 283 9e-76
gnl|LJGI|TC60576 similar to UniRef100_A7P9F5 Cluster: Chromosome... 266 2e-70
gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Ch... 262 3e-69
gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Ch... 226 2e-58
gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome... 224 8e-58
gnl|LJGI|TC68987 similar to UniRef100_Q6ILL4 Cluster: HDC09080; ... 210 1e-53
gnl|LJGI|TC62621 125 5e-28
gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 119 3e-26
gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Sal... 117 1e-25
gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4... 105 5e-22
gnl|LJGI|DC593356 weakly similar to UniRef100_A7P9F5 Cluster: Ch... 103 2e-21
gnl|LJGI|FS354708 weakly similar to UniRef100_Q9FIX3 Cluster: Gb... 60 3e-08
gnl|LJGI|BP042555 54 2e-06
>gnl|LJGI|AV409767 weakly similar to UniRef100_Q0DEH2 Cluster: Os06g0152500 protein;
n=1; Oryza sativa Japonica Group|Rep: Os06g0152500
protein - Oryza sativa subsp. japonica (Rice), partial
(6%)
Length = 411
Score = 460 bits (232), Expect = e-129
Identities = 232/232 (100%)
Strand = Plus / Plus
Query: 1 atgctgtggaggggtttgtcgccagatgagggtacttattctagtttgttcaatgcttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atgctgtggaggggtttgtcgccagatgagggtacttattctagtttgttcaatgcttat 239
Query: 61 tttagtttgatcaatgcttattgtcttggaggtgaattcagtaaggtttctaatttgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tttagtttgatcaatgcttattgtcttggaggtgaattcagtaaggtttctaatttgcat 299
Query: 121 gatcaaatgatacacaatggtgttttgcctgattttgttaccgggtcgccgtctcttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gatcaaatgatacacaatggtgttttgcctgattttgttaccgggtcgccgtctcttgtt 359
Query: 181 acatacaatgcacttatttatggctattgctttttgggtagggttgaggagg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acatacaatgcacttatttatggctattgctttttgggtagggttgaggagg 411
>gnl|LJGI|TC82170 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 832
Score = 283 bits (143), Expect = 9e-76
Identities = 239/271 (88%)
Strand = Plus / Plus
Query: 651 atatgatgctctcatagagaactgcagtaataatgaatttaagagtctggtagagcttgt 710
||||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 144 atatgattctctgatagagaactgcagtaataatgaatttaagagtgtggtagggcttgt 203
Query: 711 caaaggtttccggatgaggggtttagtgagtgaagcagccagagctcatgacactatgct 770
|||||||||| | |||||||||||||||| |||||| |||||||||| || ||| ||| |
Sbjct: 204 caaaggtttcggaatgaggggtttagtgaatgaagccgccagagctcgtgtcacaatgtt 263
Query: 771 tcacgggaatcataagccagatggaggagtttataatttcttaattgttgaacattgtag 830
| | |||||| ||||||||||||||| ||||||||||| ||||| ||||||||| |||
Sbjct: 264 tgaggggaattataagccagatggagccgtttataatttattaatatttgaacattctag 323
Query: 831 atgtaaaaatgttgataaggcgtataatatgtacacacggatggtgcattatggttttgt 890
|||| |||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 324 atgtcgtaatgttcataaggcgtatgatatgtacatggagatggtgcattatggttttgc 383
Query: 891 tcctcatatgttctctgtacttgctcttatt 921
|||||||||||||||||||| ||||||||||
Sbjct: 384 tcctcatatgttctctgtacgtgctcttatt 414
>gnl|LJGI|TC60576 similar to UniRef100_A7P9F5 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 914
Score = 266 bits (134), Expect = 2e-70
Identities = 239/274 (87%)
Strand = Plus / Plus
Query: 648 aacatatgatgctctcatagagaactgcagtaataatgaatttaagagtctggtagagct 707
|||||||||| |||| |||||||||||||||||||||||||| |||||| |||||| ||
Sbjct: 28 aacatatgatactctgatagagaactgcagtaataatgaattcaagagtgtggtaggact 87
Query: 708 tgtcaaaggtttccggatgaggggtttagtgagtgaagcagccagagctcatgacactat 767
||||||||||||| | |||||||||| || |||||||||||||||||||||||| ||
Sbjct: 88 tgtcaaaggtttcatcaagaggggtttacagaatgaagcagccagagctcatgacacaat 147
Query: 768 gcttcacgggaatcataagccagatggaggagtttataatttcttaattgttgaacattg 827
||||||||||||| ||||||||||||||| |||||||||||| ||||| || ||||
Sbjct: 148 gcttcacgggaattataagccagatggagcagtttataatttgttaatatttagtcattc 207
Query: 828 tagatgtaaaaatgttgataaggcgtataatatgtacacacggatggtgcattatggttt 887
|||| | |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 208 tagaagccttaatgttgataaggcatataatatgtacaaggagatggtgcattatggttt 267
Query: 888 tgttcctcatatgttctctgtacttgctcttatt 921
|| |||||||||||||||||| ||||||||||||
Sbjct: 268 tgatcctcatatgttctctgtgcttgctcttatt 301
>gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Chromosome chr18
scaffold_96, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_96, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 458
Score = 262 bits (132), Expect = 3e-69
Identities = 276/324 (85%)
Strand = Plus / Plus
Query: 166 tcgccgtctcttgttacatacaatgcacttatttatggctattgctttttgggtagggtt 225
||||| ||||||||||||||||||||||||||| |||||||||||||| | || ||| ||
Sbjct: 46 tcgccatctcttgttacatacaatgcacttattcatggctattgctttctcgggaggctt 105
Query: 226 gaggaggctttggggattttgaggggcatgcctgagatgggtttgtcgcctgatgctgtt 285
||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||| ||||
Sbjct: 106 caggaggcgctggggattttgaggggcatgcctcagatgggattgtcccctgatggtgtt 165
Query: 286 agttataacattgttatatccgggttttgccgaattcgggagccgggtaaggcttatgaa 345
||||||||| ||||||||||| ||| |||||||| ||||||| ||| ||||| | |||
Sbjct: 166 agttataacgctgttatatccgcgttatgccgaatccgggagctggggaaggcctttgat 225
Query: 346 ttgaagatggagatggatgaaaagaggatattgaggatggaggaagtcgtgtatgaatca 405
|||||| | ||||||||||||||||| || | |||| |||| | ||||||||
Sbjct: 226 ttgaagtttgagatggatgaaaagagcatcggtccgttggatgaagacaccaatgaatca 285
Query: 406 cttatgcaaggcctgtcggatgaggatgcttattctagtttgatgaatgattatcttgct 465
|||||| || ||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct: 286 cttatggaaccactgtcggatgaggatacttattctagtttgatgaatgaatattttgct 345
Query: 466 caaggtgacatggaaaaggcttat 489
|||||| || ||||||||||||||
Sbjct: 346 caaggtaacttggaaaaggcttat 369
>gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Chromosome chr8
scaffold_29, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 742
Score = 226 bits (114), Expect = 2e-58
Identities = 212/244 (86%), Gaps = 3/244 (1%)
Strand = Plus / Plus
Query: 74 atgcttattgtcttggaggtgaattcagtaaggtttctaatttgcatgatcaaatgatac 133
|||||| |||||||| ||||||||||||||||| || | || ||||| |||| |||||||
Sbjct: 499 atgcttgttgtcttgaaggtgaattcagtaaggcttttcatatgcatcatcagatgatac 558
Query: 134 acaatggtgttttgcctgattttgttaccgggt---cgccgtctcttgttacatacaatg 190
|||| ||||||||||||||||||||||| |||| ||||| ||||| |||||||||| |
Sbjct: 559 acaagggtgttttgcctgattttgttactgggttttcgccggctctttttacatacaacg 618
Query: 191 cacttatttatggctattgctttttgggtagggttgaggaggctttggggattttgaggg 250
| ||||| | || ||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 619 cgattattcacgggctttgctttttagggagggttgaggaggccctggggattttgaggg 678
Query: 251 gcatgcctgagatgggtttgtcgcctgatgctgttagttataacattgttatatccgggt 310
|||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |
Sbjct: 679 gcatgcctgagatgggtttgtcccctgacgctgttagttatataattgttatatccggtt 738
Query: 311 tttg 314
||||
Sbjct: 739 tttg 742
Score = 58.0 bits (29), Expect = 1e-07
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 220 agggttgaggaggctttggggattttgaggggcatgcctgagatgggtttgtcgcctgat 279
||||||||| ||| | | |||||||||||||| ||| |||||| |||||| || ||||||
Sbjct: 213 agggttgagaagggtgttgggattttgaggggtatggctgagaagggtttatcccctgat 272
Query: 280 gctgttagttata 292
|| |||||||||
Sbjct: 273 gcccttagttata 285
>gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 663
Score = 224 bits (113), Expect = 8e-58
Identities = 259/307 (84%), Gaps = 3/307 (0%)
Strand = Plus / Plus
Query: 65 gtttgatcaatgcttattgtcttggaggtgaattcagtaaggtttctaatttgcatgatc 124
||||||| ||||||||| || | | |||| | |||||||||| || | ||||||| |||
Sbjct: 266 gtttgatgaatgcttatcgtatcgaaggtcagttcagtaaggcttttcatttgcaagatg 325
Query: 125 aaatgatacacaatggtgttttgcctgattttgttaccgggt---cgccgtctcttgtta 181
|||||| |||||| ||| ||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 326 aaatgacacacaagggttttttgcctggttttgttactgggttttcgccgtctcatgtta 385
Query: 182 catacaatgcacttatttatggctattgctttttgggtagggttgaggaggctttgggga 241
||||||| || ||||||||||| |||||| ||||| ||| |||||||||| |||||
Sbjct: 386 catacaacgccattatttatggcctttgcttattgggccgggctgaggaggctctggggg 445
Query: 242 ttttgaggggcatgcctgagatgggtttgtcgcctgatgctgttagttataacattgtta 301
|||||||||||||||||||||| || ||||| |||||||||||||||||| || |||||
Sbjct: 446 ttttgaggggcatgcctgagatcgggttgtcccctgatgctgttagttattgcactgtta 505
Query: 302 tatccgggttttgccgaattcgggagccgggtaaggcttatgaattgaagatggagatgg 361
||| |||||||||||||| |||||||| || ||||| ||||| |||||| ||||| | |
Sbjct: 506 tattagggttttgccgaatccgggagccagggaaggcgtatgagttgaaggtggaggtag 565
Query: 362 atgaaaa 368
|||||||
Sbjct: 566 atgaaaa 572
Score = 56.0 bits (28), Expect = 4e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 401 aatcacttatgcaaggcctgtcggatgaggat 432
||||||||||||||||||||||| ||||||||
Sbjct: 620 aatcacttatgcaaggcctgtcgaatgaggat 651
>gnl|LJGI|TC68987 similar to UniRef100_Q6ILL4 Cluster: HDC09080; n=1; Drosophila
melanogaster|Rep: HDC09080 - Drosophila melanogaster
(Fruit fly), partial (10%)
Length = 813
Score = 210 bits (106), Expect = 1e-53
Identities = 220/258 (85%)
Strand = Plus / Plus
Query: 664 atagagaactgcagtaataatgaatttaagagtctggtagagcttgtcaaaggtttccgg 723
||||||||||||||||||||||| |||| |||| |||||| |||| ||||||||||||
Sbjct: 23 atagagaactgcagtaataatgattttaggagtgtggtagggcttatcaaaggtttcctc 82
Query: 724 atgaggggtttagtgagtgaagcagccagagctcatgacactatgcttcacgggaatcat 783
| ||||| ||||||| |||||||||||||||||||||||| |||||| | |||||| ||
Sbjct: 83 acgagggatttagtgtatgaagcagccagagctcatgacacaatgcttgaggggaattat 142
Query: 784 aagccagatggaggagtttataatttcttaattgttgaacattgtagatgtaaaaatgtt 843
|||| ||| || | |||||||||| | ||||| ||| |||||||||| | ||||||
Sbjct: 143 aagctagagggggcagtttataatgtattaatatatgatcattgtagatctggtaatgtt 202
Query: 844 gataaggcgtataatatgtacacacggatggtgcattatggttttgttcctcatatgttc 903
|||||||||| ||||||||| |||||||||||||||||||| | |||||||||||
Sbjct: 203 tgtaaggcgtatgatatgtacaaggagatggtgcattatggttttgcttctcatatgttc 262
Query: 904 tctgtacttgctcttatt 921
||||||||||||||||||
Sbjct: 263 tctgtacttgctcttatt 280
>gnl|LJGI|TC62621
Length = 736
Score = 125 bits (63), Expect = 5e-28
Identities = 201/247 (81%)
Strand = Plus / Plus
Query: 671 actgcagtaataatgaatttaagagtctggtagagcttgtcaaaggtttccggatgaggg 730
|||||||| || ||||||||||||| ||||| ||||||||||| |||| | | ||||
Sbjct: 1 actgcagttatgttgaatttaagagtgcggtagggcttgtcaaagatttcagcaccaggg 60
Query: 731 gtttagtgagtgaagcagccagagctcatgacactatgcttcacgggaatcataagccag 790
||||||||| ||||||||| | ||||||||| | |||| | || || | ||||||||
Sbjct: 61 gtttagtgaatgaagcagcgatagctcatgaaagaatgcataacatgagtgttaagccag 120
Query: 791 atggaggagtttataatttcttaattgttgaacattgtagatgtaaaaatgttgataagg 850
|||||| ||| |||||||| ||||| |||| || |||||| | |||||| ||||||
Sbjct: 121 atggagcagtctataatttattaatatttgatcactgtagaagaggcaatgttaataagg 180
Query: 851 cgtataatatgtacacacggatggtgcattatggttttgttcctcatatgttctctgtac 910
||||| | ||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 181 cgtatgaaatgtacaaggagatggtgcattatggtttttttcctcatatgttttctgtac 240
Query: 911 ttgctct 917
|| ||||
Sbjct: 241 tttctct 247
>gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 877
Score = 119 bits (60), Expect = 3e-26
Identities = 87/96 (90%)
Strand = Plus / Plus
Query: 220 agggttgaggaggctttggggattttgaggggcatgcctgagatgggtttgtcgcctgat 279
||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||
Sbjct: 564 agggttgaggaggctgtggggattttgaggggcatggctgagaggggtttgtcccctgat 623
Query: 280 gctgttagttataacattgttatatccgggttttgc 315
| ||||||||||| || | ||||||| |||||||||
Sbjct: 624 gttgttagttataccactattatatctgggttttgc 659
>gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible
protein-like; n=2; Arabidopsis thaliana|Rep:
Salt-inducible protein-like - Arabidopsis thaliana
(Mouse-ear cress), partial (5%)
Length = 669
Score = 117 bits (59), Expect = 1e-25
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 220 agggttgaggaggctttggggattttgaggggcatgcctgagatgggtttgtcgcctgat 279
||||||||| ||||| ||||||||||||||| |||| || ||| ||||||||| ||||||
Sbjct: 459 agggttgagaaggctgtggggattttgagggtcatggctaagaggggtttgtcccctgat 518
Query: 280 gctgttagttataacattgttatatccgggttttg 314
||||||||||||| || ||||||||||||||||||
Sbjct: 519 gctgttagttataccactgttatatccgggttttg 553
>gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4g28010/T13J8_120; n=1;
Arabidopsis thaliana|Rep: AT4g28010/T13J8_120 -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 1001
Score = 105 bits (53), Expect = 5e-22
Identities = 154/187 (82%), Gaps = 3/187 (1%)
Strand = Plus / Plus
Query: 74 atgcttattgtcttggaggtgaattcagtaaggtttctaatttgcatgatcaaatgatac 133
||||||||||||||| |||||||||||||| || || | ||||||||||| |||||| ||
Sbjct: 815 atgcttattgtcttgtaggtgaattcagtatggcttttcatttgcatgatgaaatgagac 874
Query: 134 acaatggtgttttgcctgattttgttaccggg---tcgccgtctcttgttacatacaatg 190
||| ||| |||||||||||||||||| | || || ||||||||||||| ||| |
Sbjct: 875 acaggggttttttgcctgattttgttattcagttttcaccatctcttgttacattcaacg 934
Query: 191 cacttatttatggctattgctttttgggtagggttgaggaggctttggggattttgaggg 250
| |||||| |||| ||||| ||||| |||||||| |||||| |||| |||||||| |
Sbjct: 935 cccttattcatgggctttgctctttggagagggttgacgaggctctgggtattttgagag 994
Query: 251 gcatgcc 257
|||||||
Sbjct: 995 gcatgcc 1001
Score = 77.8 bits (39), Expect = 1e-13
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 220 agggttgaggaggctttggggattttgaggggcatgcctgagatgggtttgtcgcctgat 279
||||||||| |||||||||||||||| || | |||| |||||| ||||||||| ||||||
Sbjct: 520 agggttgagcaggctttggggatttttagtgccatggctgagaggggtttgtcccctgat 579
Query: 280 gctgttagttataac 294
|||||||||||||
Sbjct: 580 cttgttagttataac 594
>gnl|LJGI|DC593356 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 591
Score = 103 bits (52), Expect = 2e-21
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 846 taaggcgtataatatgtacacacggatggtgcattatggttttgttcctcatatgttctc 905
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6 taaggcctataatatgtacatggagatggtgcattatggttttgttcctcatatgttctc 65
Query: 906 tgtacttgctcttatt 921
|| |||||||||||||
Sbjct: 66 tgcacttgctcttatt 81
>gnl|LJGI|FS354708 weakly similar to UniRef100_Q9FIX3 Cluster: Gb|AAD30619.1; n=1;
Arabidopsis thaliana|Rep: Gb|AAD30619.1 - Arabidopsis
thaliana, partial (3%)
Length = 543
Score = 60.0 bits (30), Expect = 3e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 884 gttttgttcctcatatgttctctgtacttgctcttatt 921
|||||| | |||||||||||||||||||||||||||||
Sbjct: 543 gttttgcttctcatatgttctctgtacttgctcttatt 506
>gnl|LJGI|BP042555
Length = 497
Score = 54.0 bits (27), Expect = 2e-06
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 227 aggaggctttggggattttgaggggcatgcctgagatgggtttgtcgcctgatgctgtta 286
|||||||| ||||||||||||||| ||| || ||| ||||| ||| ||||||| || ||
Sbjct: 327 aggaggctgtggggattttgagggatatggctaagaggggttngtcccctgatgttgata 386
Query: 287 gttataacattgttatatccgggttttgcc 316
|||| || | |||||| |||||||||||
Sbjct: 387 cttattaccctcttatatgcgggttttgcc 416