Miyakogusa Predicted Gene
- Lj3g3v3336240.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3336240.2 Non Chatacterized Hit- tr|I1MXS6|I1MXS6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.43274
PE,25.52,2e-18,B3,B3 DNA binding domain; coiled-coil,NULL; B3 DNA
binding domain,B3 DNA binding domain; DNA-binding,CUFF.45599.2
(1281 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80144 similar to UniRef100_Q9LJ67 Cluster: Gb|AAD4315... 1273 0.0
gnl|LJGI|TC76816 weakly similar to UniRef100_A7P9A4 Cluster: Chr... 779 0.0
gnl|LJGI|TC74089 similar to UniRef100_Q6R2U8 Cluster: Reduced ve... 353 2e-96
>gnl|LJGI|TC80144 similar to UniRef100_Q9LJ67 Cluster: Gb|AAD43153.1; n=1; Arabidopsis
thaliana|Rep: Gb|AAD43153.1 - Arabidopsis thaliana
(Mouse-ear cress), partial (57%)
Length = 897
Score = 1273 bits (642), Expect = 0.0
Identities = 662/671 (98%)
Strand = Plus / Plus
Query: 611 tgtccagggatataggtgtccagtttaatgcagctgagtttaaaaggtctaatgaagaag 670
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtccatggatataggtgtccagtttaatgcagctgagtttaaaaggtctaatgaagaag 60
Query: 671 tgaaattgcgcgcatctatggaggaaagaattnnnnnnnctgcgacgaagaagcgtaaat 730
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 tgaaattgcgcgcatctatggaggaaagaattaaaaaaactgcgacgaagaagcgtaaat 120
Query: 731 cagaagaccaggaacatgaagaggaggtagaaatgcgcgttagattttacgaaagtgctt 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagaagaccaggaacatgaagaggaggtagaaatgcgcgttagattttacgaaagtgctt 180
Query: 791 ctgcaagaaaaagaactgtgacagctgaagaaagagaaaaggccgtcaatgcagcaaaag 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgcaagaaaaagaactgtgacagctgaagaaagagaaaaggccgtcaatgcagcaaaag 240
Query: 851 agtttgaaccacctaatcctttctgtcgggttgtcctgcggccctcctatttatacagag 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtttgaaccacctaatcctttctgtcgggttgtcctgcggccctcctatttatacagag 300
Query: 911 gatgcattatgtatttgccatcctgttttgcagaaaagcatttgaatggtgtttcgggat 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatgcattatgtatttgccatcctgttttgcagaaaagcatttgaatggtgtttcgggat 360
Query: 971 tcattaaacttcaaacctctgatgggagacagtggccggttcgctgcctttatagaggag 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcattaaacttcaaacctctgatgggagacagtggccggttcgctgcctttatagaggag 420
Query: 1031 gtagagccaagttaagccagggttggtttgaatttgcattagataacaatttaggtgaag 1090
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 421 gtagagccaagttaagccagggttggtctgaatttgcattagataacaatttaggtgaag 480
Query: 1091 gtgatgtctgtgtgtttgagctccttaaagtgaaggatgtggcgctgcaagttactctat 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtgatgtctgtgtgtttgagctccttaaagtgaaggatgtggcgctgcaagttactctat 540
Query: 1151 ttcgtgtcactgaagatgtgggattgttgagctctcccttgcagcagaacgaaaatgcgg 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcgtgtcactgaagatgtgggattgttgagctctcccttgcagcagaacgaaaatgcgg 600
Query: 1211 tatcagctaaacaattgagttctcccttgcagcatcacctcacttcatctaaactagtta 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tatcagctaaacaattgagttctcccttgcagcatcacctcacttcatctaaactagtta 660
Query: 1271 gaaattaacat 1281
|||||||||||
Sbjct: 661 gaaattaacat 671
>gnl|LJGI|TC76816 weakly similar to UniRef100_A7P9A4 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (25%)
Length = 562
Score = 779 bits (393), Expect = 0.0
Identities = 393/393 (100%)
Strand = Plus / Plus
Query: 1 atgccgcgcccttctttctacaagcttgttctaccctccactgttcaagccaagcaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 atgccgcgcccttctttctacaagcttgttctaccctccactgttcaagccaagcaattg 229
Query: 61 aggctcccggataattttatgaggaaatatgggggtgagctttctccatttgctaccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aggctcccggataattttatgaggaaatatgggggtgagctttctccatttgctaccctc 289
Query: 121 tctgttcctgacggtagtgtctggcgtgtaggattaaaaaaggcagacaacaaatcttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tctgttcctgacggtagtgtctggcgtgtaggattaaaaaaggcagacaacaaatcttgg 349
Query: 181 ctcgttgatggttggcaagaatttgttcaacgctattccattggcgttggatacttgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctcgttgatggttggcaagaatttgttcaacgctattccattggcgttggatacttgttg 409
Query: 241 gtattcagatatgaaggcaagtcatctttcaatgttaatatcttggctacttctgagata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gtattcagatatgaaggcaagtcatctttcaatgttaatatcttggctacttctgagata 469
Query: 301 aactatcaaccagccacacgcagcagtaatgaagggccttacttcgcaagtcggcttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aactatcaaccagccacacgcagcagtaatgaagggccttacttcgcaagtcggcttaaa 529
Query: 361 tttcttgaagaaatggaagatgaagattccatt 393
|||||||||||||||||||||||||||||||||
Sbjct: 530 tttcttgaagaaatggaagatgaagattccatt 562
>gnl|LJGI|TC74089 similar to UniRef100_Q6R2U8 Cluster: Reduced vernalization response
1; n=1; Brassica rapa|Rep: Reduced vernalization response
1 - Brassica campestris (Field mustard), partial (43%)
Length = 1722
Score = 353 bits (178), Expect = 2e-96
Identities = 371/434 (85%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 746 atgaagaggaggtagaaatgcgcgttagattttacgaaagtgcttctgcaagaaaaagaa 805
|||||||||||| |||||||||| ||||||||| |||||||||||||| ||||| ||||
Sbjct: 941 atgaagaggaggcagaaatgcgctatagattttatgaaagtgcttctgctagaaagagaa 1000
Query: 806 ctgtgacagctgaagaaagagaaaaggccgtcaatgcagcaaaagagtttgaaccaccta 865
| ||||| || || |||||||| | ||| | |||| || |||| ||||||||| |||
Sbjct: 1001 ccgtgactgcggaggaaagagagagggcaattaatgatgcgaaagcatttgaaccagcta 1060
Query: 866 atcctttctgtcgggttgtcctgcggccctcctatttatacagaggatgcattatgtatt 925
||||||||||||| |||||||| || |||||||||||||| || |||||||| ||||||
Sbjct: 1061 atcctttctgtcgagttgtccttcgaccctcctatttatataggggatgcataatgtatc 1120
Query: 926 tgccatcctgttttgcagaaaagcatttgaat-ggtgtttcgggattcattaaacttcaa 984
|||| ||||| |||||||||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 1121 tgccttcctgctttgcagaaaagaatttgaatgggggtttcgggattcatcaaacttcag 1180
Query: 985 acctctgatgggagacagtggccggttcgctgcctttatagaggaggtagagccaagtta 1044
| ||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||
Sbjct: 1181 gttgccgatgggagacagtggccagttcgctgcctatatagaggaggtcgagcaaagtta 1240
Query: 1045 agccagggttggtttgaatttgcattagataacaatttaggtgaaggtgatgtctgtgtg 1104
|||||||||||||||||||| | ||||| ||||||||||| ||||| ||||||||||||
Sbjct: 1241 agccagggttggtttgaattcaccttagagaacaatttaggggaaggggatgtctgtgtg 1300
Query: 1105 tttgagctccttaaagtgaaggatgtggcgctgcaagttactctatttcgtgtcactgaa 1164
|||||||| || | | || |||||| | ||||||||||||| |||||||| | ||||||
Sbjct: 1301 tttgagctgctcagaacgagggatgtagtgctgcaagttactttatttcgtttaactgaa 1360
Query: 1165 gatgtgggattgtt 1178
|| ||||| |||||
Sbjct: 1361 gaagtggggttgtt 1374
Score = 188 bits (95), Expect = 6e-47
Identities = 230/275 (83%)
Strand = Plus / Plus
Query: 7 cgcccttctttctacaagcttgttctaccctccactgttcaagccaagcaattgaggctc 66
||||||| |||| ||||||||||||| ||||| || ||||| ||| ||| || || |
Sbjct: 172 cgcccttgtttccacaagcttgttctgccctcaacccttcaatccagacaactggggatt 231
Query: 67 ccggataattttatgaggaaatatgggggtgagctttctccatttgctaccctctctgtt 126
||||| |||||| ||||||||||||| ||| ||||||| || ||||||||||| |||||
Sbjct: 232 ccggacaattttctgaggaaatatggcggtcagctttcaacaattgctaccctcactgtt 291
Query: 127 cctgacggtagtgtctggcgtgtaggattaaaaaaggcagacaacaaatcttggctcgtt 186
|| || |||| ||| ||||||||||| ||||| ||||| ||||||| | |||| | | |
Sbjct: 292 ccagatggtactgtttggcgtgtagggttaaagaaggccgacaacagaatttggtttgct 351
Query: 187 gatggttggcaagaatttgttcaacgctattccattggcgttggatacttgttggtattc 246
||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||
Sbjct: 352 gatggttggcaagaatttgttcaacgctacaccattggcattggatactttttagtattc 411
Query: 247 agatatgaaggcaagtcatctttcaatgttaatat 281
| |||||||| || |||||||||| |||| ||||
Sbjct: 412 atgtatgaagggaattcatctttcattgttcatat 446
Score = 77.8 bits (39), Expect = 2e-13
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 614 ccagggatataggtgtccagtttaatgcagctgagtttaaaaggtctaatgaagaagtga 673
|||| ||||||||||| ||||||||||| | ||| ||||||||||||| ||||||| |||
Sbjct: 779 ccagagatataggtgttcagtttaatgctgttgaatttaaaaggtctactgaagaattga 838
Query: 674 aattgcg 680
|||||||
Sbjct: 839 aattgcg 845