Miyakogusa Predicted Gene

Lj3g3v3336110.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3336110.1 Non Chatacterized Hit- tr|I1NPY2|I1NPY2_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,27.25,2e-18,seg,NULL,CUFF.45583.1
         (1851 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS343174 weakly similar to UniRef100_Q9FM45 Cluster: Ar...  1080   0.0  
gnl|LJGI|AV769410 weakly similar to UniRef100_Q9C247 Cluster: Re...   458   e-128
gnl|LJGI|AV408968 weakly similar to UniRef100_A7QAM5 Cluster: Ch...   391   e-107

>gnl|LJGI|FS343174 weakly similar to UniRef100_Q9FM45 Cluster: Arabidopsis thaliana
           genomic DNA  chromosome 5  P1 clone:MNF13; n=3;
           Arabidopsis thaliana|, partial (3%)
          Length = 628

 Score = 1080 bits (545), Expect = 0.0
 Identities = 545/545 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaatttcttagaaacgatgcccgaacaatcgtgtcgcatcttaaacgccaagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  atgaaatttcttagaaacgatgcccgaacaatcgtgtcgcatcttaaacgccaagagaaa 143

                                                                       
Query: 61  cagattaaacttaagaggaggtggttattgggcattccttccacaaaatctgagaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 cagattaaacttaagaggaggtggttattgggcattccttccacaaaatctgagaggaag 203

                                                                       
Query: 121 aagttggacaagattttcaaaaatagctatatgcctgaatctatactcagggaagatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aagttggacaagattttcaaaaatagctatatgcctgaatctatactcagggaagatgat 263

                                                                       
Query: 181 atattttatgagtcagtgagaactcatgttgaaggtgcccttggagcacaaagcattgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atattttatgagtcagtgagaactcatgttgaaggtgcccttggagcacaaagcattgaa 323

                                                                       
Query: 241 agagagaatcatgttccattggatgatatgcatttgacgcaagtatcggatatgaaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agagagaatcatgttccattggatgatatgcatttgacgcaagtatcggatatgaaaagg 383

                                                                       
Query: 301 ttgatattatcgtgccttaacaaattgaccaccaagggtctacaccgtcttgctatgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgatattatcgtgccttaacaaattgaccaccaagggtctacaccgtcttgctatgata 443

                                                                       
Query: 361 gttactggtggctcaatcgagtctgtgataactcgtggcaatttgaaaatgattatcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttactggtggctcaatcgagtctgtgataactcgtggcaatttgaaaatgattatcaag 503

                                                                       
Query: 421 ggttctctttcaagtgttctgagtagcaaaagcgataaccatcagcaaagggaaactcgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggttctctttcaagtgttctgagtagcaaaagcgataaccatcagcaaagggaaactcgt 563

                                                                       
Query: 481 ggacagctttttcaacttctcagcgatccacagcattttcgagataggtctgggcctttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggacagctttttcaacttctcagcgatccacagcattttcgagataggtctgggcctttg 623

                
Query: 541 cctga 545
           |||||
Sbjct: 624 cctga 628


>gnl|LJGI|AV769410 weakly similar to UniRef100_Q9C247 Cluster: Related to a-agglutinin
            core protein AGA1; n=1; Neurospora crassa|Rep: Related to
            a-agglutinin core protein AGA1 - Neurospora crassa,
            partial (5%)
          Length = 405

 Score =  458 bits (231), Expect = e-128
 Identities = 231/231 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1621 gcaggtcatatgttggaggagtttgccataactgaaggccgagatttaaactcgagcagt 1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405  gcaggtcatatgttggaggagtttgccataactgaaggccgagatttaaactcgagcagt 346

                                                                        
Query: 1681 actttatacctcagtggtgataatcaaattgaagatcgggaagaaataaaagaaccgtca 1740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345  actttatacctcagtggtgataatcaaattgaagatcgggaagaaataaaagaaccgtca 286

                                                                        
Query: 1741 tcatttgggaaacatacaatgtattcaacagttgctcgaatagttaaagagctgagtcct 1800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285  tcatttgggaaacatacaatgtattcaacagttgctcgaatagttaaagagctgagtcct 226

                                                               
Query: 1801 tcctttccagacagaagcatggagagactgaagatgttgatgagcttatga 1851
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225  tcctttccagacagaagcatggagagactgaagatgttgatgagcttatga 175


>gnl|LJGI|AV408968 weakly similar to UniRef100_A7QAM5 Cluster: Chromosome chr5
           scaffold_72, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr5 scaffold_72, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (7%)
          Length = 197

 Score =  391 bits (197), Expect = e-107
 Identities = 197/197 (100%)
 Strand = Plus / Plus

                                                                       
Query: 665 ctcagttacaaccctgcaaacatggatgggatagggaccatctaatgaagctagtgaata 724
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctcagttacaaccctgcaaacatggatgggatagggaccatctaatgaagctagtgaata 60

                                                                       
Query: 725 atatgagtaggaagatgctttcacaacatgatagaggaaatgagctacaggagccattag 784
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atatgagtaggaagatgctttcacaacatgatagaggaaatgagctacaggagccattag 120

                                                                       
Query: 785 ctaaagccatggcagtagcagacttatcgctacaagtgacaaatggtgatcgcagcatat 844
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctaaagccatggcagtagcagacttatcgctacaagtgacaaatggtgatcgcagcatat 180

                            
Query: 845 tttcagaagaattttat 861
           |||||||||||||||||
Sbjct: 181 tttcagaagaattttat 197