Miyakogusa Predicted Gene
- Lj3g3v3315960.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3315960.1 Non Chatacterized Hit- tr|I1LJN5|I1LJN5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.28433
PE,70.07,0,FPA,NULL; RNA RECOGNITION MOTIF-CONTAINING,NULL; seg,NULL;
RNA-binding domain, RBD,NULL; no descript,CUFF.45555.1
(2979 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78217 similar to UniRef100_Q52ZH7 Cluster: FPA; n=2; ... 1098 0.0
gnl|LJGI|TC77664 similar to UniRef100_A7QYR4 Cluster: Chromosome... 906 0.0
gnl|LJGI|BP084941 weakly similar to UniRef100_A7QYR4 Cluster: Ch... 539 e-152
gnl|LJGI|TC69632 similar to UniRef100_Q52ZH7 Cluster: FPA; n=2; ... 385 e-105
gnl|LJGI|AV419161 218 2e-55
>gnl|LJGI|TC78217 similar to UniRef100_Q52ZH7 Cluster: FPA; n=2; Pisum sativum|Rep: FPA
- Pisum sativum (Garden pea), partial (19%)
Length = 557
Score = 1098 bits (554), Expect = 0.0
Identities = 556/557 (99%)
Strand = Plus / Plus
Query: 1776 caagtttgccgataacaacaccttattcttggtacctccttctgattttcttacagatat 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagtttgccgataacaacaccttattcttggtacctccttctgattttcttacagatat 60
Query: 1836 tttgaaagtcactgggcctgaacgtctatatggtgtggttcttaagtttccatcattgcc 1895
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttganagtcactgggcctgaacgtctatatggtgtggttcttaagtttccatcattgcc 120
Query: 1896 aaatagcacacccatgcaagaatcatcgcatttgccaataccgtcaactcagtatatgca 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatagcacacccatgcaagaatcatcgcatttgccaataccgtcaactcagtatatgca 180
Query: 1956 gcagattcctccttcgcaggctgaatatggtatgattccttcaaaggaggaacggttttt 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcagattcctccttcgcaggctgaatatggtatgattccttcaaaggaggaacggttttt 240
Query: 2016 gcaagcggattacaacaggtcgctgcatgacgactctaagctttctgctaaaccaatagc 2075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcaagcggattacaacaggtcgctgcatgacgactctaagctttctgctaaaccaatagc 300
Query: 2076 tacaggtgggccccctcctgttcagtctatgccttcagaatatgctcctaatactactgt 2135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tacaggtgggccccctcctgttcagtctatgccttcagaatatgctcctaatactactgt 360
Query: 2136 ttctgggtcccaagctgcagttggattaacacctgagcttattgcaactttagcttcgtt 2195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttctgggtcccaagctgcagttggattaacacctgagcttattgcaactttagcttcgtt 420
Query: 2196 tcttcctgcaaatgcacaatcatctgcccctgatggtgcaaatccagcaggaggctcctt 2255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcttcctgcaaatgcacaatcatctgcccctgatggtgcaaatccagcaggaggctcctt 480
Query: 2256 gaatgtgaagcctccatttcctccttcggcacctaatgatggaaaccaatctcatttgtg 2315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaatgtgaagcctccatttcctccttcggcacctaatgatggaaaccaatctcatttgtg 540
Query: 2316 gaaacaggatcatcaaa 2332
|||||||||||||||||
Sbjct: 541 gaaacaggatcatcaaa 557
>gnl|LJGI|TC77664 similar to UniRef100_A7QYR4 Cluster: Chromosome chr5 scaffold_253,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_253, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 481
Score = 906 bits (457), Expect = 0.0
Identities = 475/481 (98%)
Strand = Plus / Plus
Query: 448 caggcagtgaaaatcatgaatgggcaacgaataggcggggatcaaattcgtgttgatttc 507
|||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct: 1 caggcaatgaaaatcatgaatgggaaacgaataggcggggagcaaattcgtgttgacttc 60
Query: 508 ctccggtcgaattctacaaaaagggaccaattgcctgattatggtcagtttcaaggaaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctccggtcgaattctacaaaaagggaccaattgcctgattatggtcagtttcaaggaaaa 120
Query: 568 agcatggggcctactgattcctattctggacagaaaagaccactgctttccccgccatta 627
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 121 agcatggggcctactgattcctattctggacagaaaagaccactgcattcaccgccatta 180
Query: 628 atgggaaggaagggcgatcatataccgagtaatattttgtggattggttatccccctgct 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgggaaggaagggcgatcatataccgagtaatattttgtggattggttatccccctgct 240
Query: 688 gttcagattgacgagcaaatgcttcataatgcaatgatcttgtttggtgaaattgagagg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttcagattgacgagcaaatgcttcataatgcaatgatcttgtttggtgaaattgagagg 300
Query: 748 atcaggagctttccttcaaagaaccatgcattggttgaatttagaagcgtcgatgaagct 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcaggagctttccttcaaagaaccatgcattggttgaatttagaagcgtcgatgaagct 360
Query: 808 cggcgtgcaaaagagggccttcaagggcgcctttttaatgatcctcgaattacaattacg 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cggcgtgcaaaagagggccttcaagggcgcctttttaatgatcctcgaattacaattacg 420
Query: 868 tattcgagcagtgacccggtacctggcaaagattaccctaccttttatcctggaagtaat 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tattcgagcagtgacccggtacctggcaaagattaccctaccttttatcctggaagtaat 480
Query: 928 g 928
|
Sbjct: 481 g 481
>gnl|LJGI|BP084941 weakly similar to UniRef100_A7QYR4 Cluster: Chromosome chr5
scaffold_253, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_253, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (9%)
Length = 435
Score = 539 bits (272), Expect = e-152
Identities = 304/316 (96%), Gaps = 9/316 (2%)
Strand = Plus / Minus
Query: 1 atgccgcctccggcgaaatcaaccccgaggccgccttctcccgaaggagg---------g 51
|||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 316 atgccgcctccggcgaaatcaaccccgaggccgccttctcaggaaggcggtgaagactcg 257
Query: 52 tcggtgtcgccgtcgaacaacctctgggtggggaatctggcgccggacgtgaccgactcc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcggtgtcgccgtcgaacaacctctgggtggggaatctggcgccggacgtgaccgactcc 197
Query: 112 gatctgatggatctcttcgcgcagtacggcgccctcgatagcgtcacctgttatacttct 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gatctgatggatctcttcgcgcagtacggcgccctcgatagcgtcacctgttatacttct 137
Query: 172 cgcagctacgccttcgtcttcttcaagcgcgtcgatgatgccaaagccgccaaaaacgcc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cgcagctacgccttcgtcttcttcaagcgcgtcgatgatgccaaagccgccaaaaacgcc 77
Query: 232 cttcaaggcttctccctccgcggcgtttcattgaagattgaatttgcatttccggcaaag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 cttcaaggcttctccctccgcggcgtttcattgaagattgaatttgcatttccggcaaag 17
Query: 292 ccatgtaagcagcttt 307
||||||||||||||||
Sbjct: 16 ccatgtaagcagcttt 1
>gnl|LJGI|TC69632 similar to UniRef100_Q52ZH7 Cluster: FPA; n=2; Pisum sativum|Rep: FPA
- Pisum sativum (Garden pea), partial (10%)
Length = 632
Score = 385 bits (194), Expect = e-105
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 2786 cagtgggtcaaataaactcggatgcacccaatcagcaacttcctgtctttggagctggtc 2845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtgggtcaaataaactcggatgcacccaatcagcaacttcctgtctttggagctggtc 60
Query: 2846 aaggtacttcagaagtggaggctgataagaaccagagatatcagtcaacactgcagtttg 2905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaggtacttcagaagtggaggctgataagaaccagagatatcagtcaacactgcagtttg 120
Query: 2906 ctgccaatcttctcttgcaaatacagcagcagcagcaaacccaaggaggaaatggacctg 2965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgccaatcttctcttgcaaatacagcagcagcagcaaacccaaggaggaaatggacctg 180
Query: 2966 gagttcaacagtga 2979
||||||||||||||
Sbjct: 181 gagttcaacagtga 194
>gnl|LJGI|AV419161
Length = 110
Score = 218 bits (110), Expect = 2e-55
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 2340 tcaatccatttatcctcctccacagttcaggagtatgtataactttaacaatggtcatta 2399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaatccatttatcctcctccacagttcaggagtatgtataactttaacaatggtcatta 60
Query: 2400 tcagtcttatccaccagcaccggctcctggtcaccctgctcaactggtct 2449
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcagtcttatccaccagcaccggctcctggtcaccctgctcaactggtct 110