Miyakogusa Predicted Gene

Lj3g3v3315950.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3315950.1 Non Chatacterized Hit- tr|A5AN63|A5AN63_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,28.63,2e-17,DNA-binding pseudobarrel domain,DNA-binding
pseudobarrel domain; coiled-coil,NULL; B3,B3 DNA binding,CUFF.45554.1
         (1143 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71408 UniRef100_A2R4J9 Cluster: 60S ribosomal subunit...    70   3e-11

>gnl|LJGI|TC71408 UniRef100_A2R4J9 Cluster: 60S ribosomal subunit assembly/export
            protein loc1; n=1; Aspergillus niger|Rep: 60S ribosomal
            subunit assembly/export protein loc1 - Aspergillus niger,
            partial (5%)
          Length = 716

 Score = 69.9 bits (35), Expect = 3e-11
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                       
Query: 1043 gggagaagggaggcagttctgggaccaaagctgaagatgcaga 1085
            ||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 106  gggagaagggaggcagttctgagaccaaggctgaagatgcaga 148



 Score = 56.0 bits (28), Expect = 5e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                        
Query: 1043 gggagaagggaggcagttctgggaccaa 1070
            ||||||||||||||||||||||||||||
Sbjct: 43   gggagaagggaggcagttctgggaccaa 70