Miyakogusa Predicted Gene
- Lj3g3v3314920.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3314920.1 Non Chatacterized Hit- tr|F6HQE5|F6HQE5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40,4e-18,PPR,Pentatricopeptide repeat; PPR: pentatricopeptide
repeat domain,Pentatricopeptide repeat; SUBFAMI,CUFF.45560.1
(382 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 107 5e-23
gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Sal... 96 2e-19
gnl|LJGI|FS338098 weakly similar to UniRef100_A7Q333 Cluster: Ch... 84 7e-16
gnl|LJGI|BW605216 similar to UniRef100_A7Q333 Cluster: Chromosom... 84 7e-16
gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Ch... 64 7e-10
gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4... 60 1e-08
gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome... 52 3e-06
>gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 877
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 62 ttgaggagatgaaacggaagggtttggcacctgatgagaagacttactcgtctctctttc 121
||||||||||||| |||||||||||||| |||||||||| ||||||| |||||||| |||
Sbjct: 373 ttgaggagatgaatcggaagggtttggcccctgatgagaggacttacacgtctctcattc 432
Query: 122 atttgttctgcgac 135
||||||||||||||
Sbjct: 433 atttgttctgcgac 446
Score = 79.8 bits (40), Expect = 1e-14
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 272 gggttgagaaggctgtggagattttgagaagcatgcctgagaggggtttgtcccctgatg 331
|||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 565 gggttgaggaggctgtggggattttgaggggcatggctgagaggggtttgtcccctgatg 624
>gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible
protein-like; n=2; Arabidopsis thaliana|Rep:
Salt-inducible protein-like - Arabidopsis thaliana
(Mouse-ear cress), partial (5%)
Length = 669
Score = 95.6 bits (48), Expect = 2e-19
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 4 aatgcggttattcagggtttgtgcgtggaaaggaggaaagaagaagctgaggcggtgttt 63
||||||||||||||||| ||||||| ||| ||| |||||| ||||||| |||| ||
Sbjct: 210 aatgcggttattcaggggttgtgcgaagaagaacggatagaagaggctgaggaggtggtt 269
Query: 64 gaggagatgaaacggaagggtttggcacctgatgagaagacttactcgtctctctttcat 123
||||||||||| |||||||||||| | ||||||||||| |||||| |||||| |||||
Sbjct: 270 gaggagatgaatcggaagggtttgacccctgatgagaacacttacatgtctctgtttcag 329
Query: 124 ttgttctgcgac 135
|| ||||||||
Sbjct: 330 ctgctctgcgac 341
Score = 85.7 bits (43), Expect = 2e-16
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 267 agagggggttgagaaggctgtggagattttgagaagcatgcctgagaggggtttgtcccc 326
|||| |||||||||||||||||| ||||||||| |||| || ||||||||||||||||
Sbjct: 455 agagagggttgagaaggctgtggggattttgagggtcatggctaagaggggtttgtcccc 514
Query: 327 tgatgctgaaagttatagcaatgttat 353
|||||||| ||||||| || ||||||
Sbjct: 515 tgatgctgttagttataccactgttat 541
>gnl|LJGI|FS338098 weakly similar to UniRef100_A7Q333 Cluster: Chromosome chr12
scaffold_47, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_47, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (3%)
Length = 792
Score = 83.8 bits (42), Expect = 7e-16
Identities = 99/118 (83%)
Strand = Plus / Plus
Query: 12 tattcagggtttgtgcgtggaaaggaggaaagaagaagctgaggcggtgtttgaggagat 71
||||||| | || |||| |||| |||||| | ||| ||||| | |||| || |||||||
Sbjct: 214 tattcagagattctgcgcggaagggaggataacagaggctgaagaggtgcttcaggagat 273
Query: 72 gaaacggaagggtttggcacctgatgagaagacttactcgtctctctttcatttgttc 129
||| |||||||||||||| |||||||||| |||||| |||||||| |||||||||||
Sbjct: 274 gaatcggaagggtttggcccctgatgagactacttacacgtctctcattcatttgttc 331
Score = 56.0 bits (28), Expect = 2e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 173 ataaggttttgagtgaaatgattgatagcgggttttcaccctcggttg 220
||||| |||||||| ||||||||| ||| || ||||||||||||||||
Sbjct: 672 ataagcttttgagtcaaatgattgctagtggcttttcaccctcggttg 719
>gnl|LJGI|BW605216 similar to UniRef100_A7Q333 Cluster: Chromosome chr12 scaffold_47,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_47, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (3%)
Length = 482
Score = 83.8 bits (42), Expect = 7e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 44 aagaagctgaggcggtgtttgaggagatgaaacggaagggtttggcacctgatgagaaga 103
|||| ||||||||| || |||||||||||| |||||||||||||| |||||||||| ||
Sbjct: 266 aagaggctgaggcgatgcttgaggagatgagtcggaagggtttggctcctgatgagagga 325
Query: 104 cttactcgtctctc 117
||||| ||||||||
Sbjct: 326 cttacacgtctctc 339
>gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Chromosome chr8
scaffold_29, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 742
Score = 63.9 bits (32), Expect = 7e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 272 gggttgagaaggctgtggagattttgagaagcatgcctgagaggggtttgtcccctgatg 331
|||||||| |||| ||| ||||||||| |||||||||||| ||||||||||||||| |
Sbjct: 649 gggttgaggaggccctggggattttgaggggcatgcctgagatgggtttgtcccctgacg 708
Query: 332 ctgaaagttata 343
||| |||||||
Sbjct: 709 ctgttagttata 720
>gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4g28010/T13J8_120;
n=1; Arabidopsis thaliana|Rep: AT4g28010/T13J8_120 -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 1001
Score = 60.0 bits (30), Expect = 1e-08
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 272 gggttgagaaggctgtggagattttgagaagcatgcctgagaggggtttgtcccctgatg 331
|||||||| ||||| ||| |||||| || |||| |||||||||||||||||||||||
Sbjct: 521 gggttgagcaggctttggggatttttagtgccatggctgagaggggtttgtcccctgatc 580
Query: 332 ctgaaagttatagcaatgttatttctaagtttggccaa 369
|| ||||||| | ||| |||||||||||| |||||
Sbjct: 581 ttgttagttataacgctgtaatttctaagttttgccaa 618
>gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 663
Score = 52.0 bits (26), Expect = 3e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 302 gcatgcctgagaggggtttgtcccctgatgctgaaagttatagcaatgttatttctaagt 361
||||| ||||||||| |||||||||||||| || | ||||| || | ||||||||||||
Sbjct: 5 gcatgactgagagggatttgtcccctgatgttgttacttataacactcttatttctaagt 64
Query: 362 tt 363
||
Sbjct: 65 tt 66
Score = 52.0 bits (26), Expect = 3e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 276 tgagaaggctgtggagattttgagaagcatgcctgagaggggtttgtcccctgatgctga 335
|||| ||||| ||| | ||||||| |||||||||||| || ||||||||||||||||
Sbjct: 429 tgaggaggctctgggggttttgaggggcatgcctgagatcgggttgtcccctgatgctgt 488
Query: 336 aagttatagcaatgttat 353
|||||| ||| ||||||
Sbjct: 489 tagttattgcactgttat 506