Miyakogusa Predicted Gene

Lj3g3v3312790.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3312790.2 Non Chatacterized Hit- tr|F4IAF4|F4IAF4_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At1,40.54,2e-18,coiled-coil,NULL,CUFF.45548.2
         (705 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV776680 similar to UniRef100_Q7XZV4 Cluster: Aleurone ...   295   2e-79
gnl|LJGI|TC70482 similar to UniRef100_A7QM59 Cluster: Chromosome...    88   9e-17

>gnl|LJGI|AV776680 similar to UniRef100_Q7XZV4 Cluster: Aleurone layer morphogenesis
           protein; n=1; Oryza sativa Japonica Group|Rep: Aleurone
           layer morphogenesis protein - Oryza sativa subsp.
           japonica (Rice), partial (6%)
          Length = 501

 Score =  295 bits (149), Expect = 2e-79
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                       
Query: 557 gaaaaagattatcagaggctgtctttatcgcgctaagtccatgccaggaacttgatggtg 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaaagattatcagaggctgtctttatcgcgctaagtccatgccaggaacttgatggtg 442

                                                                       
Query: 617 tatgtcgtgagaacaactggctccttccaacttatcatctttttcaatcagttggtggat 676
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgtcgtgagaacaactggctccttccaacttatcatctttttcaatcagttggtggat 382

                                        
Query: 677 tccaagctaatgtaactgttaaaggagtg 705
           |||||||||||||||||||||||||||||
Sbjct: 381 tccaagctaatgtaactgttaaaggagtg 353


>gnl|LJGI|TC70482 similar to UniRef100_A7QM59 Cluster: Chromosome chr5 scaffold_124,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr5 scaffold_124, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (8%)
          Length = 752

 Score = 87.7 bits (44), Expect = 9e-17
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                       
Query: 591 aagtccatgccaggaacttgatggtgtatgtcgtgagaacaactggctccttccaactta 650
           |||||| ||||||||||| ||||||||||||| ||  || |||||| |||| ||||||||
Sbjct: 181 aagtccttgccaggaactagatggtgtatgtcatgcaaataactggatcctaccaactta 240

                                                               
Query: 651 tcatctttttcaatcagttggtggattccaagctaatgtaactgttaaagga 702
           |  | | |  ||||||| ||||||||||||||||||| |||| |||||||||
Sbjct: 241 tagtttatcgcaatcagctggtggattccaagctaatttaacagttaaagga 292