Miyakogusa Predicted Gene
- Lj3g3v3243180.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3243180.1 tr|B9GQ57|B9GQ57_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_753951 PE=4
SV=1,27.18,8e-18,DUF295,Protein of unknown function DUF295; A Receptor
for Ubiquitination Targets,F-box domain, cycli,CUFF.45515.1
(1180 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV422434 similar to UniRef100_A7P8P1 Cluster: Chromosom... 385 e-106
gnl|LJGI|BW602963 similar to UniRef100_A7P8P1 Cluster: Chromosom... 321 6e-87
gnl|LJGI|TC67753 similar to UniRef100_A7P8P1 Cluster: Chromosome... 155 7e-37
gnl|LJGI|TC72516 119 4e-26
gnl|LJGI|TC72855 weakly similar to UniRef100_A7P8P1 Cluster: Chr... 96 6e-19
gnl|LJGI|BP069765 54 2e-06
>gnl|LJGI|AV422434 similar to UniRef100_A7P8P1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 422
Score = 385 bits (194), Expect = e-106
Identities = 330/376 (87%), Gaps = 17/376 (4%)
Strand = Plus / Plus
Query: 28 ccactaattttctccctccaaaaaatgcagcccccaaaatcgacggcggtagactggtct 87
|||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 6 ccactatttttctccctccaaaaaatgccgccaccaaaatcgacggcggtagactggtct 65
Query: 88 caactgccgacggagctcctccatctgatctcagaacgcctcgacagcccgctctacctc 147
||||| ||||||||||||||||||||||| || |||||||||| |||||||||||||||
Sbjct: 66 caactcccgacggagctcctccatctgatttcccaacgcctcgatagcccgctctacctc 125
Query: 148 ctccgcttccgctccgtctgttccacatggcgccgctcttcctcacccgccgtcaccccc 207
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 126 ctccgcttccgctccgtctgttccacatggcgccgctcttcctcatccgccgtcacgccc 185
Query: 208 ctccaccactttcccctcatcttcccaaccctctccgatgatcccgcttccaccgtcttc 267
|| ||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 186 cttcaccact-----------ttcccaaccctctccgacgacaccgcttccaccttcttc 234
Query: 268 ctctcccaacgcaccgtcttcctcatcaccccaccgccacaacaaccaaccccaaccgca 327
|||||||||||||||||||||||||||| ||||||||||| ||||||||| | || |
Sbjct: 235 ctctcccaacgcaccgtcttcctcatcatcccaccgccactccaaccaaccgaaccccta 294
Query: 328 acccccttgttggtccaaatcggccaagacctaagcggcggaac---ccgcctcttcgac 384
|||||||||||| |||||||| |||||||| | |||| |||| |||||||| ||||
Sbjct: 295 acccccttgttgttccaaatcagccaagac---aacggctgaacccgccgcctctacgac 351
Query: 385 cccctctcttcccacc 400
||||||||||| ||||
Sbjct: 352 cccctctcttctcacc 367
>gnl|LJGI|BW602963 similar to UniRef100_A7P8P1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 454
Score = 321 bits (162), Expect = 6e-87
Identities = 289/332 (87%), Gaps = 17/332 (5%)
Strand = Plus / Plus
Query: 72 ggcggtagactggtctcaactgccgacggagctcctccatctgatctcagaacgcctcga 131
||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 95 ggcggtagactggtctcaactcccgacggagctcctccatctgatttcccaacgcctcga 154
Query: 132 cagcccgctctacctcctccgcttccgctccgtctgttccacatggcgccgctcttcctc 191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tagcccgctctacctcctccgcttccgctccgtctgttccacatggcgccgctcttcctc 214
Query: 192 acccgccgtcacccccctccaccactttcccctcatcttcccaaccctctccgatgatcc 251
| |||||||||| ||||| ||||||| ||||||||||||||||| || |
Sbjct: 215 atccgccgtcacgccccttcaccact-----------ttcccaaccctctccgacgacac 263
Query: 252 cgcttccaccgtcttcctctcccaacgcaccgtcttcctcatcaccccaccgccacaaca 311
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 264 cgcttccaccttcttcctctcccaacgcaccgtcttcctcatcatcccaccgccactcca 323
Query: 312 accaaccccaaccgcaacccccttgttggtccaaatcggccaagacctaagcggcggaac 371
||||||| | || ||||||||||||| |||||||| |||||||| | |||| ||||
Sbjct: 324 accaaccgaacccctaacccccttgttgttccaaatcagccaagac---aacggctgaac 380
Query: 372 ---ccgcctcttcgaccccctctcttcccacc 400
|||||||| ||||||||||||||| ||||
Sbjct: 381 ccgccgcctctacgaccccctctcttctcacc 412
>gnl|LJGI|TC67753 similar to UniRef100_A7P8P1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 697
Score = 155 bits (78), Expect = 7e-37
Identities = 199/239 (83%), Gaps = 9/239 (3%)
Strand = Plus / Plus
Query: 78 agactggtctcaactgccgacggagctcctccatctgatctcagaacgcctcgacagccc 137
||||||||||||||| ||| |||||||||||||||| |||||| |||||||| |||||||
Sbjct: 128 agactggtctcaactcccggcggagctcctccatctaatctcacaacgcctcaacagccc 187
Query: 138 gctctacctcctccgcttccgctccgtctgttccacatggcgccgctcttcctcacccgc 197
||||||||||||||||| || |||||||| ||||| ||||||| ||||||| || || |
Sbjct: 188 actctacctcctccgctttcgatccgtctgctccacctggcgccactcttccgcatcctc 247
Query: 198 cgtcacccccctccaccactttcccctcatcttcccaaccctctccgat---gatc---- 250
| ||| |||| ||||||| || ||| ||| |||||| ||||||||||| ||||
Sbjct: 248 cttcatccccatccaccatttccccttcaatttcccacccctctccgatcacgatcacca 307
Query: 251 --ccgcttccaccgtcttcctctcccaacgcaccgtcttcctcatcaccccaccgccac 307
||||||| || ||| |||| || ||||||||||| |||||||||||||||| ||||
Sbjct: 308 cgacgcttcctccttctccctcaccaaacgcaccgtcgtcctcatcaccccaccaccac 366
>gnl|LJGI|TC72516
Length = 660
Score = 119 bits (60), Expect = 4e-26
Identities = 119/138 (86%), Gaps = 3/138 (2%)
Strand = Plus / Plus
Query: 78 agactggtctcaactgccgacggagctcctccatctgatctcagaacgcctcgacagccc 137
||||||||||||||| ||| |||||||||||| ||| |||||||||||| |||||| ||
Sbjct: 223 agactggtctcaactcccggcggagctcctccgtctaatctcagaacgcatcgacactcc 282
Query: 138 gctctacctcctccgcttccgctccgtctgttccacatggcgccgctcttcctcacccgc 197
||| |||||||||||||||| ||||||||||||| ||| ||||||||| ||||| |
Sbjct: 283 actccacctcctccgcttccgatccgtctgttccatctgg---cgctcttccgcaccccc 339
Query: 198 cgtcacccccctccacca 215
|||| ||||||||||||
Sbjct: 340 tgtcatccccctccacca 357
>gnl|LJGI|TC72855 weakly similar to UniRef100_A7P8P1 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (11%)
Length = 761
Score = 95.6 bits (48), Expect = 6e-19
Identities = 92/106 (86%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 78 agactggtctcaactgccgacggagctcctccatctgatctcagaacgcct---cgacag 134
||||||||||||||||||| |||||||||||||||| || | |||| |||| |||||
Sbjct: 137 agactggtctcaactgccggcggagctcctccatctaattttagaatgcctcgacgacac 196
Query: 135 cccgctctacctcctccgcttccgctccgtctgttccacatggcgc 180
||| ||| ||| |||||||||||| |||||||| ||||||||||||
Sbjct: 197 cccactcgaccgcctccgcttccgatccgtctgctccacatggcgc 242
>gnl|LJGI|BP069765
Length = 417
Score = 54.0 bits (27), Expect = 2e-06
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 979 gaccgggttttgttcttggggcatgtatgtgccttctctgcttcagcttcggatttgggt 1038
||||||||| ||||| | ||| ||| |||||||| |||| ||| |||||||||||||||
Sbjct: 386 gaccgggttctgttcataggggatgattgtgccttttctgtttctgcttcggatttgggt 327
Query: 1039 gtt 1041
|||
Sbjct: 326 gtt 324