Miyakogusa Predicted Gene

Lj3g3v3237860.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3237860.1 Non Chatacterized Hit- tr|I3SNZ2|I3SNZ2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.28,0,S4
RNA-binding domain,RNA-binding S4 domain; U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN PROTEIN IMP3,NULL;,CUFF.45490.1
         (423 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59538 similar to UniRef100_A7PAF2 Cluster: Chromosome...   799   0.0  
gnl|LJGI|BW619567 similar to UniRef100_A7PAF2 Cluster: Chromosom...   236   9e-62
gnl|LJGI|TC79928 similar to UniRef100_A7PAF2 Cluster: Chromosome...   178   2e-44

>gnl|LJGI|TC59538 similar to UniRef100_A7PAF2 Cluster: Chromosome chr14 scaffold_9,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_9, whole genome shotgun
           sequence - Vitis vinifera (Grape), complete
          Length = 948

 Score =  799 bits (403), Expect = 0.0
 Identities = 412/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   atattcaagcttatgcggaatggttcagaagttggtaaacatattgaaacagatggaccc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atattcaagcttatgcggaatggttcagaagttggtaaacatattgaaacagatggaccc 328

                                                                       
Query: 69  caaggaccctgttcgggtcgatatgactgataagcttttggaaaaactttacaacatggg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caaggaccctgttcgggtcgatatgactgataagcttttggaaaaactttacaacatggg 388

                                                                       
Query: 129 tgtgattccaaccaggcaaagcatcacacaatgtgaacacttaactgtgtcatccttctg 188
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 389 tgtgattccaaccaggcaaagcatcacacaatgtgaacacttaactgtttcatccttctg 448

                                                                       
Query: 189 taggcgtaggctctcgactgttttggtgcgactaaaatttgctgagcacttgaaagaagc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taggcgtaggctctcgactgttttggtgcgactaaaatttgctgagcacttgaaagaagc 508

                                                                       
Query: 249 tgtgacgtatattgagcaggggcatgtgcgagttggtccagagacagttacagatccagc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgtgacgtatattgagcaggggcatgtgcgagttggtccagagacagttacagatccagc 568

                                                                       
Query: 309 tttccttgtaactagaaacatggaagactttgtgacatgggtggattcatccaagataaa 368
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 569 tttccttgtaactagaaacatggaagactttgtggcatgggtggattcatccaagataaa 628

                                                                  
Query: 369 gagaaaggtgcttaagtacaatgacaagttggatgactatgatataatgaattaa 423
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 629 gagaaaggtgcttaagtacaatgacaagttggacgactatgatataatgaattaa 683


>gnl|LJGI|BW619567 similar to UniRef100_A7PAF2 Cluster: Chromosome chr14 scaffold_9,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_9, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (49%)
          Length = 486

 Score =  236 bits (119), Expect = 9e-62
 Identities = 131/135 (97%)
 Strand = Plus / Plus

                                                                       
Query: 9   atattcaagcttatgcggaatggttcagaagttggtaaacatattgaaacagatggaccc 68
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atattcaagtgtatgcggaatggttcagaagttggtaaacatattgaaacagatggaccc 411

                                                                       
Query: 69  caaggaccctgttcgggtcgatatgactgataagcttttggaaaaactttacaacatggg 128
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 412 caaggatcctgttcgggtcgatatgactgataagcttttggaaaagctttacaacatggg 471

                          
Query: 129 tgtgattccaaccag 143
           |||||||||||||||
Sbjct: 472 tgtgattccaaccag 486


>gnl|LJGI|TC79928 similar to UniRef100_A7PAF2 Cluster: Chromosome chr14 scaffold_9,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_9, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (19%)
          Length = 424

 Score =  178 bits (90), Expect = 2e-44
 Identities = 105/110 (95%)
 Strand = Plus / Plus

                                                                       
Query: 314 ttgtaactagaaacatggaagactttgtgacatgggtggattcatccaagataaagagaa 373
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   ttgtaactagaaacctggaagactttgtgacatgggtggattcatcccagataaagagaa 60

                                                             
Query: 374 aggtgcttaagtacaatgacaagttggatgactatgatataatgaattaa 423
           |||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 61  aggtgcttaagtaccatgaccagttggacgactatgatataatgaattaa 110