Miyakogusa Predicted Gene
- Lj3g3v3236550.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3236550.1 gi|1370145|emb|Z73951.1|.path1.1
(651 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60126 UniRef100_Q40193 Cluster: Ras-related protein R... 1291 0.0
gnl|LJGI|TC78859 homologue to UniRef100_A7PIM3 Cluster: Chromoso... 168 3e-41
gnl|LJGI|TC59004 homologue to UniRef100_A7QC87 Cluster: Chromoso... 92 5e-18
gnl|LJGI|TC58220 RAB11I [Lotus japonicus] 66 3e-10
gnl|LJGI|TC71887 UniRef100_Q40194 Cluster: Ras-related protein R... 60 2e-08
gnl|LJGI|AU088863 homologue to UniRef100_Q40199 Cluster: RAB11I;... 58 7e-08
gnl|LJGI|TC64728 homologue to UniRef100_Q08149 Cluster: GTP-bind... 58 7e-08
gnl|LJGI|TC57539 UniRef100_Q40191 Cluster: Ras-related protein R... 54 1e-06
gnl|LJGI|FS341189 similar to UniRef100_Q1SL05 Cluster: Ras GTPas... 52 4e-06
>gnl|LJGI|TC60126 UniRef100_Q40193 Cluster: Ras-related protein Rab11C; n=1; Lotus
japonicus|Rep: Ras-related protein Rab11C - Lotus
japonicus, complete
Length = 1175
Score = 1291 bits (651), Expect = 0.0
Identities = 651/651 (100%)
Strand = Plus / Plus
Query: 1 atggcgcacagggtggaccatgagtatgactatctcttcaagatcgtcttgatcggagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 atggcgcacagggtggaccatgagtatgactatctcttcaagatcgtcttgatcggagac 285
Query: 61 tctggtgtcggcaaatccaatatcctctccaggtttactcggaacgagttctgcttggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tctggtgtcggcaaatccaatatcctctccaggtttactcggaacgagttctgcttggag 345
Query: 121 tccaaatctactattggtgttgaattcgccaccaggactcttcaggtagagggaaagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tccaaatctactattggtgttgaattcgccaccaggactcttcaggtagagggaaagact 405
Query: 181 gttaaggcacagatctgggatacagcaggtcaagagcgatatcgcgccattaccagtgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gttaaggcacagatctgggatacagcaggtcaagagcgatatcgcgccattaccagtgct 465
Query: 241 tattacagaggagctgttggtgctctccttgtatatgacataactaagaggcaaaccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tattacagaggagctgttggtgctctccttgtatatgacataactaagaggcaaaccttt 525
Query: 301 gacaatgtccagaggtggctgcgtgaattgagggaccatgcggattctaacatagttatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gacaatgtccagaggtggctgcgtgaattgagggaccatgcggattctaacatagttatc 585
Query: 361 atgatggctggaaataaatctgatttgaaccatcttagagctgtttcggaggatgacgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atgatggctggaaataaatctgatttgaaccatcttagagctgtttcggaggatgacgga 645
Query: 421 ggagcgttggcagagaaggaaggtctctcatttcttgagacatctgcactggaagcaacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggagcgttggcagagaaggaaggtctctcatttcttgagacatctgcactggaagcaacc 705
Query: 481 aacattgagaaggcattccaaaccatattgacagaaatctaccatattgttagcaaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aacattgagaaggcattccaaaccatattgacagaaatctaccatattgttagcaaaaaa 765
Query: 541 gcacttgctgctcaggaagcaactgctggtgcctcagttcctggtcaaggaaccactatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gcacttgctgctcaggaagcaactgctggtgcctcagttcctggtcaaggaaccactatc 825
Query: 601 aatgttgctgatacttctgggaacacaaagaaaggttgctgttccacttga 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 aatgttgctgatacttctgggaacacaaagaaaggttgctgttccacttga 876
>gnl|LJGI|TC78859 homologue to UniRef100_A7PIM3 Cluster: Chromosome chr13
scaffold_17, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_17, whole genome
shotgun sequence - Vitis vinifera (Grape), complete
Length = 1001
Score = 168 bits (85), Expect = 3e-41
Identities = 295/365 (80%)
Strand = Plus / Plus
Query: 13 gtggaccatgagtatgactatctcttcaagatcgtcttgatcggagactctggtgtcggc 72
||||||||||| || || |||||||||||||| || | || |||||||||||||| ||
Sbjct: 86 gtggaccatgaatacgattatctcttcaagattgtactcattggagactctggtgttggg 145
Query: 73 aaatccaatatcctctccaggtttactcggaacgagttctgcttggagtccaaatctact 132
||||||||||| |||||||||||||| || || ||||| || ||||||||||| |||||
Sbjct: 146 aaatccaatatactctccaggtttacccgaaatgagttttgtttggagtccaagtctacc 205
Query: 133 attggtgttgaattcgccaccaggactcttcaggtagagggaaagactgttaaggcacag 192
||||| || ||||| || || || || | ||||| ||||| |||||||| ||||||||
Sbjct: 206 attggggtcgaatttgcaactagaacattacaggtggaggggaagactgtaaaggcacaa 265
Query: 193 atctgggatacagcaggtcaagagcgatatcgcgccattaccagtgcttattacagagga 252
|| ||||| || || ||||||||| | || | || ||||| ||||| || |||||||||
Sbjct: 266 atatgggacaccgctggtcaagagaggtacagagctattactagtgcatactacagagga 325
Query: 253 gctgttggtgctctccttgtatatgacataactaagaggcaaacctttgacaatgtccag 312
||||||||||| | | || || | ||| || || |||||||| ||||| ||||| |||
Sbjct: 326 gctgttggtgccttgttggtgtacggcatgacaaaaaggcaaacatttgaaaatgtgcag 385
Query: 313 aggtggctgcgtgaattgagggaccatgcggattctaacatagttatcatgatggctgga 372
|||||||| || || | ||||||||||| || | ||||| ||||| |||||||| |||
Sbjct: 386 aggtggcttcgcgagctaagggaccatgccgacgccaacattgttattatgatggccgga 445
Query: 373 aataa 377
|||||
Sbjct: 446 aataa 450
>gnl|LJGI|TC59004 homologue to UniRef100_A7QC87 Cluster: Chromosome undetermined
scaffold_77, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_77, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (86%)
Length = 889
Score = 91.7 bits (46), Expect = 5e-18
Identities = 127/154 (82%)
Strand = Plus / Plus
Query: 22 gagtatgactatctcttcaagatcgtcttgatcggagactctggtgtcggcaaatccaat 81
||||| || ||||| |||||| | || ||||||||||| || |||||||| |||||||||
Sbjct: 113 gagtacgattatctgttcaaggttgtgttgatcggagattcaggtgtcggtaaatccaat 172
Query: 82 atcctctccaggtttactcggaacgagttctgcttggagtccaaatctactattggtgtt 141
|||||||| | || || || ||||||||||||||||||||||| || || || || ||
Sbjct: 173 ctcctctcccgattcacccgcaacgagttctgcttggagtccaagtccaccatcggcgtc 232
Query: 142 gaattcgccaccaggactcttcaggtagagggaa 175
|||||||| || | |||||| |||| |||||||
Sbjct: 233 gaattcgctactcgtactcttgaggttgagggaa 266
Score = 52.0 bits (26), Expect = 4e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 457 gagacatctgcactggaagcaaccaacattgagaaggcattccaaaccat 506
||||||||||| || ||||||||||| |||| ||||| |||||||||||
Sbjct: 548 gagacatctgctcttgaagcaaccaatgttgacaaggctttccaaaccat 597
>gnl|LJGI|TC58220 RAB11I [Lotus japonicus]
Length = 1015
Score = 65.9 bits (33), Expect = 3e-10
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 49 ttgatcggagactctggtgtcggcaaatccaatatcctctccaggtttactcggaacgag 108
|||||||||||||| ||||||||||| ||||| | || || | || || |||||||||
Sbjct: 199 ttgatcggagactccggtgtcggcaagtccaacctgctttctcgattcacccggaacgag 258
Query: 109 ttctgcttggagtccaaatctactattggtgttgaattcgccacc 153
||| |||||||||||| || || || || |||||||||||||||
Sbjct: 259 ttcaacttggagtccaagtccaccatcggcgttgaattcgccacc 303
Score = 58.0 bits (29), Expect = 7e-08
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 175 aagactgttaaggcacagatctgggatacagcaggtcaagagcgatatcgcgccattacc 234
|||||||| ||||| || |||||||| || || |||||||| |||| || || || ||
Sbjct: 325 aagactgtcaaggcgcaaatctgggacaccgctggtcaagaaagataccgtgcaatcaca 384
Query: 235 agtgcttattacagaggagctgttggtgc 263
|||||||| || |||||||||||||||||
Sbjct: 385 agtgcttactatagaggagctgttggtgc 413
>gnl|LJGI|TC71887 UniRef100_Q40194 Cluster: Ras-related protein Rab11D; n=1; Lotus
japonicus|Rep: Ras-related protein Rab11D - Lotus
japonicus, complete
Length = 1340
Score = 60.0 bits (30), Expect = 2e-08
Identities = 168/214 (78%)
Strand = Plus / Plus
Query: 50 tgatcggagactctggtgtcggcaaatccaatatcctctccaggtttactcggaacgagt 109
||||||| || |||||||||||||| ||||| | |||||||| || || ||||||||
Sbjct: 338 tgatcggcgattctggtgtcggcaagtccaacttgctctccagattcaccaagaacgagt 397
Query: 110 tctgcttggagtccaaatctactattggtgttgaattcgccaccaggactcttcaggtag 169
|| |||||||||||||| ||||| || ||||| ||||| |||| ||| | | || |
Sbjct: 398 tcaatttggagtccaaatccactatcggcgttgagttcgctaccaagaccttgaacgttg 457
Query: 170 agggaaagactgttaaggcacagatctgggatacagcaggtcaagagcgatatcgcgcca 229
| | ||| |||||||| ||||| ||||| || || ||||| || | || || ||||
Sbjct: 458 atgccaaggtcgttaaggctcagatttgggacactgctggtcaggaaaggtaccgtgcca 517
Query: 230 ttaccagtgcttattacagaggagctgttggtgc 263
|||| |||||||| ||| ||||||||||||||||
Sbjct: 518 ttactagtgcttactaccgaggagctgttggtgc 551
>gnl|LJGI|AU088863 homologue to UniRef100_Q40199 Cluster: RAB11I; n=1; Lotus
japonicus|Rep: RAB11I - Lotus japonicus, complete
Length = 680
Score = 58.0 bits (29), Expect = 7e-08
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 175 aagactgttaaggcacagatctgggatacagcaggtcaagagcgatatcgcgccattacc 234
|||||||| ||||| || |||||||| || || |||||||| |||| || || || ||
Sbjct: 46 aagactgtcaaggcgcaaatctgggacaccgctggtcaagaaagataccgtgcaatcaca 105
Query: 235 agtgcttattacagaggagctgttggtgc 263
|||||||| || |||||||||||||||||
Sbjct: 106 agtgcttactatagaggagctgttggtgc 134
>gnl|LJGI|TC64728 homologue to UniRef100_Q08149 Cluster: GTP-binding protein; n=1;
Pisum sativum|Rep: GTP-binding protein - Pisum sativum
(Garden pea), complete
Length = 1184
Score = 58.0 bits (29), Expect = 7e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 113 gcttggagtccaaatctactattggtgttgaattcgccacc 153
||||||| |||||||| || |||||||||||||||||||||
Sbjct: 358 gcttggaatccaaatccaccattggtgttgaattcgccacc 398
>gnl|LJGI|TC57539 UniRef100_Q40191 Cluster: Ras-related protein Rab11A; n=1; Lotus
japonicus|Rep: Ras-related protein Rab11A - Lotus
japonicus, complete
Length = 985
Score = 54.0 bits (27), Expect = 1e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 101 ggaacgagttctgcttggagtccaaatctactattggtgttgaattc 147
||||||||||| ||||||| ||||| || || |||||||||||||||
Sbjct: 178 ggaacgagttcagcttggactccaagtccacgattggtgttgaattc 224
>gnl|LJGI|FS341189 similar to UniRef100_Q1SL05 Cluster: Ras GTPase; Sigma-54 factor,
interaction region; n=1; Medicago truncatula|Rep: Ras
GTPase; Sigma-54 factor, interaction region - Medicago
truncatula (Barrel medic), partial (70%)
Length = 743
Score = 52.0 bits (26), Expect = 4e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 457 gagacatctgcactggaagcaaccaacattgagaaggcattccaaaccat 506
||||||||||| ||||| |||||||| |||| ||||||||| |||||||
Sbjct: 487 gagacatctgctctggaggcaaccaatgttgacaaggcattcaaaaccat 536