Miyakogusa Predicted Gene
- Lj3g3v3235420.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3235420.1 tr|Q3LRE2|Q3LRE2_SOYBN SP-2 OS=Glycine max PE=4
SV=1,81.4,0.00000000001,Transcription factor IIA (TFIIA), beta-barrel
domain,Transcription factor IIA, beta-barrel; Transcri,CUFF.45465.1
(1164 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59178 similar to UniRef100_Q2HS28 Cluster: Transcript... 1294 0.0
gnl|LJGI|TC60165 similar to UniRef100_Q2HS29 Cluster: Transcript... 595 e-169
gnl|LJGI|TC77617 homologue to UniRef100_Q2HS28 Cluster: Transcri... 295 3e-79
gnl|LJGI|TC73261 similar to UniRef100_Q2HS29 Cluster: Transcript... 147 2e-34
>gnl|LJGI|TC59178 similar to UniRef100_Q2HS28 Cluster: Transcription factor IIA,
helical; n=1; Medicago truncatula|Rep: Transcription
factor IIA, helical - Medicago truncatula (Barrel
medic), partial (62%)
Length = 770
Score = 1294 bits (653), Expect = 0.0
Identities = 653/653 (100%)
Strand = Plus / Plus
Query: 1 atggcggcttccaccaccagccaggtctacgttcaggtcatcgacgacgtcgtcaacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 atggcggcttccaccaccagccaggtctacgttcaggtcatcgacgacgtcgtcaacaag 177
Query: 61 gttcgcgatgagttcgtcaacaacgccggtcccggcgacgaagtcctcaaggagcttcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gttcgcgatgagttcgtcaacaacgccggtcccggcgacgaagtcctcaaggagcttcaa 237
Query: 121 tctatttgggaatcgaagatgattcaagctggtgtgtttcttggtccaatagaaaggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tctatttgggaatcgaagatgattcaagctggtgtgtttcttggtccaatagaaaggtct 297
Query: 181 ggcactgttaagccagtgcaaggtggtccgattacgccggtgcatgatcttaatgtgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggcactgttaagccagtgcaaggtggtccgattacgccggtgcatgatcttaatgtgcct 357
Query: 241 tatactgaggagtatgaaacccccactgctgaaatgcttttcccccctaccccggcacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tatactgaggagtatgaaacccccactgctgaaatgcttttcccccctaccccggcacaa 417
Query: 301 acacctattcaaacccctttgccaggaactgtggatagctctatgtataacattcctact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acacctattcaaacccctttgccaggaactgtggatagctctatgtataacattcctact 477
Query: 361 ggacctagtgattacccatcttctgggaatgattctggagccaatgtggagattaaaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggacctagtgattacccatcttctgggaatgattctggagccaatgtggagattaaaggt 537
Query: 421 ggaagacccggtctgtacatgcaacctccttctccatggatgaacccaaggccttctctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggaagacccggtctgtacatgcaacctccttctccatggatgaacccaaggccttctctt 597
Query: 481 gatgtcaatgttgcttatgtggaagggcgggacgaggcagacagaggaaatcccaatcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gatgtcaatgttgcttatgtggaagggcgggacgaggcagacagaggaaatcccaatcaa 657
Query: 541 cccctgacacaggacttcttcacaatgtcctcagggaagcgaaaacgtgatgaagttgct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cccctgacacaggacttcttcacaatgtcctcagggaagcgaaaacgtgatgaagttgct 717
Query: 601 tctcaatataatgctggtggatatatacctcagcaagatggagctggagatgc 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tctcaatataatgctggtggatatatacctcagcaagatggagctggagatgc 770
>gnl|LJGI|TC60165 similar to UniRef100_Q2HS29 Cluster: Transcription factor IIA,
beta-barrel; n=1; Medicago truncatula|Rep: Transcription
factor IIA, beta-barrel - Medicago truncatula (Barrel
medic), complete
Length = 1014
Score = 595 bits (300), Expect = e-169
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 620 gatatatacctcagcaagatggagctggagatgccagatcccggaattttgaaattgaac 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatatatacctcagcaagatggagctggagatgccagatcccggaattttgaaattgaac 60
Query: 680 tgtatggagggggcatctccattggtgcaggtcaccctacttctaaagagaaaatgccag 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtatggagggggcatctccattggtgcaggtcaccctacttctaaagagaaaatgccag 120
Query: 740 cacatttggagaggccagcttctcggattcctcaacatgatggaccaattccctatgatg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacatttggagaggccagcttctcggattcctcaacatgatggaccaattccctatgatg 180
Query: 800 atgatgtgctttctaccccaaatatatataattatgggggaacgttcactgaagactaca 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgatgtgctttctaccccaaatatatataattatgggggaacgttcactgaagactaca 240
Query: 860 acattgcgaacacaccagcacctcctgaagtaccagccagtactcctgcccttgttgcgc 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acattgcgaacacaccagcacctcctgaagtaccagccagtactcctgcccttgttgcgc 300
Score = 327 bits (165), Expect = 9e-89
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 1000 ttagatcagggagaggatcagaatacacaacatcttgttctggcccagtttgacaaagtg 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagatcagggagaggatcagaatacacaacatcttgttctggcccagtttgacaaagtg 440
Query: 1060 acgcgaaccaagagcagatggaagtgcacactaaaggatggtatcatgcacataaacaat 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgcgaaccaagagcagatggaagtgcacactaaaggatggtatcatgcacataaacaat 500
Query: 1120 aaggatattctcttcaacaaggcgaatggagaatttgacttctga 1164
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggatattctcttcaacaaggcgaatggagaatttgacttctga 545
>gnl|LJGI|TC77617 homologue to UniRef100_Q2HS28 Cluster: Transcription factor IIA,
helical; n=1; Medicago truncatula|Rep: Transcription
factor IIA, helical - Medicago truncatula (Barrel
medic), partial (46%)
Length = 764
Score = 295 bits (149), Expect = 3e-79
Identities = 420/510 (82%), Gaps = 9/510 (1%)
Strand = Plus / Plus
Query: 7 gcttccaccaccagccaggtctacgttcaggtcatcgacgacgtcgtcaacaaggttcgc 66
|||||| ||||||||||||||||| | | || ||||| || ||| | |||||| |||
Sbjct: 258 gcttcctccaccagccaggtctacatcgatgtaatcgaggatgtcatggtcaaggtccgc 317
Query: 67 gatgagttcgtcaacaacgccggtcccggcgacgaagtcctcaaggagcttcaatctatt 126
|| |||||||||||||||| ||||| || || ||||| ||||||||||||||| ||||
Sbjct: 318 gacgagttcgtcaacaacggtggtcctggagaggaagttctcaaggagcttcaagctatg 377
Query: 127 tgggaatcgaagatgattcaagctggtgtgtttcttggtccaatagaaaggtctggcact 186
|||||||| |||||||| ||||||||||| | |||||||| ||||||||||| |
Sbjct: 378 tgggaatcaaagatgatccaagctggtgtagtgcttggtcctatagaaaggtccattgca 437
Query: 187 gttaagccagtgcaaggtggtccgattacgccggtgcatgatcttaatgtgccttat--- 243
| ||||||| ||| |||||||||||||| |||||||| |||||||||||||| |||
Sbjct: 438 gctaagccaatgccgggtggtccgattacaccggtgcacgatcttaatgtgccgtatgag 497
Query: 244 ---actgaggagtatgaaacccccactgctgaaatgcttttcccccctaccccggcacaa 300
||||||||||||||||| || || ||||| | |||||||||||||| || |||
Sbjct: 498 gggactgaggagtatgaaactcctacagctgatttacttttcccccctacgccattgcaa 557
Query: 301 acacctattcaaacccctttgccaggaactgtggatagctctatgtataacattcctact 360
|| || |||||||||||||| || ||||||||||||| ||| |||||||||||||||
Sbjct: 558 actccaattcaaacccctttaccgggaactgtggataactca---tataacattcctact 614
Query: 361 ggacctagtgattacccatcttctgggaatgattctggagccaatgtggagattaaaggt 420
||||||||||||||| | |||||||| |||||| | ||| ||| | || ||||||
Sbjct: 615 ggacctagtgattactcttcttctggcaatgatgcaagagggaatattgatgcaaaaggt 674
Query: 421 ggaagacccggtctgtacatgcaacctccttctccatggatgaacccaaggccttctctt 480
|||||||| |||| || ||||| || |||||||||||||||||||| |||||||| |||
Sbjct: 675 ggaagacctggtccatatatgcagcccccttctccatggatgaacccgaggccttcactt 734
Query: 481 gatgtcaatgttgcttatgtggaagggcgg 510
||||||||||||||||| ||||||||||||
Sbjct: 735 gatgtcaatgttgcttacgtggaagggcgg 764
>gnl|LJGI|TC73261 similar to UniRef100_Q2HS29 Cluster: Transcription factor IIA,
beta-barrel; n=1; Medicago truncatula|Rep: Transcription
factor IIA, beta-barrel - Medicago truncatula (Barrel
medic), partial (51%)
Length = 568
Score = 147 bits (74), Expect = 2e-34
Identities = 134/154 (87%)
Strand = Plus / Plus
Query: 1009 ggagaggatcagaatacacaacatcttgttctggcccagtttgacaaagtgacgcgaacc 1068
|||||||| || |||||||| ||||| ||| |||||||||||||||| || || || |||
Sbjct: 92 ggagaggaccaaaatacacatcatctagttttggcccagtttgacaaggtcacacgtacc 151
Query: 1069 aagagcagatggaagtgcacactaaaggatggtatcatgcacataaacaataaggatatt 1128
|||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct: 152 aagagcaggtggaaatgcacactaaaggatggcatcatgcacataaataataaggatgtt 211
Query: 1129 ctcttcaacaaggcgaatggagaatttgacttct 1162
|| ||||| ||||||| || || ||||||||||
Sbjct: 212 ctgttcaataaggcgacaggggagtttgacttct 245